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BaseInfo

ncRNA ID novel_zma_miR5413
Species Zea mays
Class miRNA
Genome position Chr2:31754886-31754974 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 66 - AGGGGACGCUUUAGAGGAUCUUGU - 89
Stem-loop(if miRNA) --A      G  U      A       -  -   CA        CU
   GGGGAC CU UAGAGG UCUUGUU GG AGG  UAGGGGAC  G
   |||||| || |||||| ||||||| || |||  ||||||||
   UUCCUG GA AUUUCC AGGACAG CC UUU  AUCCUCUG  A
UUG      -  C      G       G  A   AC        CC
Stem-loop sequence AGGGGACGCUUUAGAGGAUCUUGUUGGAGGCAUAGGGGACCUGACCGUCUCCUACAUUUACCGGACAGGAGCCUUUACAGGUCCUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660954.2
ncRNA:24   UGUUCUAGGAGAUUUCGCAGGGGA   1
  |||||=||||||||||||||||||
targets:146   ACAAGGUCCUCUAAAGCGUCCCCU   169

1.0 PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660953.2
ncRNA:24   UGUUCUAGGAGAUUUCGCAGGGGA   1
  |||||=||||||||||||||||||
targets:146   ACAAGGUCCUCUAAAGCGUCCCCU   169

1.0 PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA NA coding protein psRNATarget