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BaseInfo

ncRNA ID	novel_zma_miR5411
Species	Zea mays
Class	miRNA
Genome position	Chr10:23187843-23187941 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	21
Mature sequence(if miRNA)	1 - AUAAAAUGGAUGGACUAAAAA - 21
Stem-loop(if miRNA)	--        CUA         A                         U   UUUAGUUU   CAUUUUAUU UAUUUUAGUCUCUAAAUUAUUAAAU C   ||||||||   ||||||||| ||||||||||||||||||||||||| C   AAAUCAGG   GUAAAAUAA AUAAAAUCAGAGAUUUAAUAGUUUA A AA        UAG         A                         U
Stem-loop sequence	UUUAGUUUCUACAUUUUAUUAUAUUUUAGUCUCUAAAUUAUUAAAUUCCAUAUUUGAUAAUUUAGAGACUAAAAUAAAAUAAAAUGGAUGGACUAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052038.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |||||||||=||||||||||| targets:196   UUUUUAGUCUAUCCAUUUUAU   216 Target Full Sequence	1.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT083561.2	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |||||||||=||||||||||| targets:199   UUUUUAGUCUAUCCAUUUUAU   219 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657139.2	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |||||||||||||=||||||* targets:4121   UUUUUAGUCCAUCUAUUUUAG   4141 Target Full Sequence	2.5	PREDICTED: Zea mays ribosome biogenesis protein BMS1 homolog (LOC103634616), mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   ||||||||||*|||||||||| targets:2984   UUUUUAGUCCCUCCAUUUUAU   3004 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   ||||||||||*|||||||||| targets:2595   UUUUUAGUCCCUCCAUUUUAU   2615 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   ||||||||||*|||||||||| targets:477   UUUUUAGUCCCUCCAUUUUAU   497 Target Full Sequence	1.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY105486.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   *|||||||||*|||||||||| targets:1017   AUUUUAGUCCUUCCAUUUUAU   1037 Target Full Sequence	1.5	Zea mays PCO104538 mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:289   UGUUUAGUCCCUCCAUUUUAU   309 Target Full Sequence	1.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:164   UGUUUAGUCCCUCCAUUUUAU   184 Target Full Sequence	1.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:164   UGUUUAGUCCCUCCAUUUUAU   184 Target Full Sequence	1.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:164   UGUUUAGUCCCUCCAUUUUAU   184 Target Full Sequence	1.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:73   UGUUUAGUCCCUCCAUUUUAU   93 Target Full Sequence	1.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:73   UGUUUAGUCCCUCCAUUUUAU   93 Target Full Sequence	1.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   |*||||||||*|||||||||| targets:73   UGUUUAGUCCCUCCAUUUUAU   93 Target Full Sequence	1.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
HI406614.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   **|||||||||||||*||||| targets:152   ACUUUAGUCCAUCCACUUUAU   172 Target Full Sequence	1.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB167075.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   **|||||||||||||*||||| targets:152   ACUUUAGUCCAUCCACUUUAU   172 Target Full Sequence	1.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   **|||||||||||||*||||| targets:152   ACUUUAGUCCAUCCACUUUAU   172 Target Full Sequence	1.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235523.1	ncRNA:20   AAAAUCAGGUAGGUAAAAUA   1   |||||||||*|||||||||* targets:1   UUUUAGUCCCUCCAUUUUAG   20 Target Full Sequence	2.5	Sequence 1518 from Patent EP2985353	NA	coding protein	psRNATarget
HI403393.1	ncRNA:20   AAAAUCAGGUAGGUAAAAUA   1   |||||||||*|||||||||* targets:1   UUUUAGUCCCUCCAUUUUAG   20 Target Full Sequence	2.5	Sequence 1518 from Patent EP2074227	NA	coding protein	psRNATarget
JB163854.1	ncRNA:20   AAAAUCAGGUAGGUAAAAUA   1   |||||||||*|||||||||* targets:1   UUUUAGUCCCUCCAUUUUAG   20 Target Full Sequence	2.5	Sequence 1518 from Patent EP2559767	NA	coding protein	psRNATarget
EZ084146.1	ncRNA:21   AAAAAUCAGGUAGGUAAAAUA   1   **||||||||||||*|||||* targets:121   ACUUUAGUCCAUCCCUUUUAG   141 Target Full Sequence	2.5	TSA: Zea mays contig19790, mRNA sequence	NA	coding protein	psRNATarget