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BaseInfo

ncRNA ID	novel_zma_miR5407
Species	Zea mays
Class	miRNA
Genome position	Chr2:106903936-106904090 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AACCGAACAAGAUCUGAGGGGUGA - 24
Stem-loop(if miRNA)	--   GG  G  GG           CUAUCC                A   -----A       -------U          CUU   ACC  UU AG  UUUGUUCGGUU      UAAUUUAUAUGGAUUG GAA      GAUUUAG        GAAUUUUAAU   A   |||  || ||  |||||||||||      |||||||||||||||| |||      |||||||        ||||||||||   UGG  GA UC  GAACAAGCCAA      GUUAGAUAUAUCUAAC CUU      CUAAGUU        UUUAAAAUUG   G AG   -G  G  UA           -UAAAA                -   CAUUAA       UAACUUUC          AAU
Stem-loop sequence	ACCGGUUGAGGGUUUGUUCGGUUCUAUCCUAAUUUAUAUGGAUUGAGAAAGAUUUAGUGAAUUUUAAUCUUAGUAAGUUAAAAUUUCUUUCAAUUUGAAUCAAUUACUUCCAAUCUAUAUAGAUUGAAAAUAACCGAACAAGAUCUGAGGGGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167414.1	ncRNA:24   AGUGGGGAGUCUAGAACAAGCCAA   1   |*|*|=||=||||||||||||||| targets:59   UAAACUCUUAGAUCUUGUUCGGUU   82 Target Full Sequence	2.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   AGUGGGGAGUCUAGAACAAGCCAA   1   |*|*|=||=||||||||||||||| targets:59   UAAACUCUUAGAUCUUGUUCGGUU   82 Target Full Sequence	2.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   AGUGGGGAGUCUAGAACAAGCCAA   1   |*|*|=||=||||||||||||||| targets:59   UAAACUCUUAGAUCUUGUUCGGUU   82 Target Full Sequence	2.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   AGUG-------GGGAGUCUAGAACAAGCCAA   1   ||||-------||||=|||*||||||||||| targets:358   UCACGUGUGCCCCCUUAGACCUUGUUCGGUU   388 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget