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BaseInfo

ncRNA ID	novel_zma_miR5401
Species	Zea mays
Class	miRNA
Genome position	Chr2:154774421-154774512 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAGGAACCGCAUGUAGAAAUACGA - 24
Stem-loop(if miRNA)	---G         G       G              AC             AUUUCUACA GCGGUUC UUAAGAAAACCGCC  UAGAAAUCA     ||||||||| ||||||| ||||||||||||||  ||||||||U     UAAAGAUGU CGCCAAG AAUUCUUUUGGCGG  AUUUUUAGG AGCA         A       G              AC
Stem-loop sequence	GAUUUCUACAGGCGGUUCGUUAAGAAAACCGCCACUAGAAAUCAUGGAUUUUUACAGGCGGUUUUCUUAAGGAACCGCAUGUAGAAAUACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407102.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |||-|||||||||||||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	0.0	Sequence 5227 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239232.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |||-|||||||||||||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	0.0	Sequence 5227 from Patent EP2985353	NA	coding protein	psRNATarget
JB167563.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |||-|||||||||||||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	0.0	Sequence 5227 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |=|-|||||||||||||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	0.0	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |=|-|||||||||||||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	0.0	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   |=|-|||||||||||||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	0.0	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   ||*||||||||||*|||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   ||*||||||||||*|||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   AGCAUAAAGAUGUACGCCAAGGAA   1   ||*||||||||||*|||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget