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BaseInfo

ncRNA ID novel_zma_miR5397
Species Zea mays
Class miRNA
Genome position Chr2:189993151-189993222 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - UAGCAAUUUAGGGACUAAAAUGGA - 24
Stem-loop(if miRNA) --                   AC      AGAAACU
  CAUUUUAGUUCUUAAAUUG  AAAUAC       A
  |||||||||||||||||||  ||||||
  GUAAAAUCAGGGAUUUAAC  UUUAUG       A
AG                   GA      CAGACAA
Stem-loop sequence CAUUUUAGUUCUUAAAUUGACAAAUACAGAAACUAAAACAGACGUAUUUAGCAAUUUAGGGACUAAAAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943837.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||||||
targets:426   UCCAUUUUAGUCCCUAAAUUGCUA   449

0.0 Zea mays clone 1689635 mRNA sequence NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||=|||||||||||
targets:2115   UCCAUUUUAGUCUCUAAAUUGCUA   2138

1.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||=|||||||||||
targets:2115   UCCAUUUUAGUCUCUAAAUUGCUA   2138

1.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
LQ239062.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|||||||||||||||||||||
targets:24   UCUAUUUUAGUCCCUAAAUUGCUA   47

0.0 Sequence 5057 from Patent EP2985353 NA coding protein psRNATarget
JB167393.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|||||||||||||||||||||
targets:24   UCUAUUUUAGUCCCUAAAUUGCUA   47

0.0 Sequence 5057 from Patent EP2559767 NA coding protein psRNATarget
HI406932.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|||||||||||||||||||||
targets:24   UCUAUUUUAGUCCCUAAAUUGCUA   47

0.0 Sequence 5057 from Patent EP2074227 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||||*|
targets:2167   UCCAUUUUAGUCCCUAAAUUGCCA   2190

1.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546127.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  |==|||||||||=|||||||||||
targets:1436   UUUAUUUUAGUCUCUAAAUUGCUA   1459

1.5 PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA NA coding protein psRNATarget
NM_001111805.2
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  |==||||||||=||||||||||||
targets:1524   UUUAUUUUAGUUCCUAAAUUGCUA   1547

1.5 Zea mays uncharacterized LOC542191 (TIDP2941), mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:310   UCCAUUUUAGUCCCUAAAUUACUA   333

1.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
AY104678.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  |==||||||||=||||||||||||
targets:1513   UUUAUUUUAGUUCCUAAAUUGCUA   1536

1.5 Zea mays PCO081661 mRNA sequence NA coding protein psRNATarget
HI406713.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:185   UCCAUUUUAGUCCCUAAAUUACUA   208

1.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:185   UCCAUUUUAGUCCCUAAAUUACUA   208

1.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:185   UCCAUUUUAGUCCCUAAAUUACUA   208

1.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:94   UCCAUUUUAGUCCCUAAAUUACUA   117

1.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:94   UCCAUUUUAGUCCCUAAAUUACUA   117

1.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:94   UCCAUUUUAGUCCCUAAAUUACUA   117

1.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
LQ235481.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1476 from Patent EP2985353 NA coding protein psRNATarget
JB163812.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1476 from Patent EP2559767 NA coding protein psRNATarget
HI403351.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1476 from Patent EP2074227 NA coding protein psRNATarget
JB163832.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1496 from Patent EP2559767 NA coding protein psRNATarget
LQ235578.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
JB163864.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1528 from Patent EP2559767 NA coding protein psRNATarget
HI403363.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1488 from Patent EP2074227 NA coding protein psRNATarget
HI403270.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1395 from Patent EP2074227 NA coding protein psRNATarget
LQ235561.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
JB163892.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
JB163731.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1395 from Patent EP2559767 NA coding protein psRNATarget
JB163880.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
HI403448.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
HI403309.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
LQ235501.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1496 from Patent EP2985353 NA coding protein psRNATarget
HI403431.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
JB163770.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
HI403403.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1528 from Patent EP2074227 NA coding protein psRNATarget
LQ235493.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1488 from Patent EP2985353 NA coding protein psRNATarget
LQ235400.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1395 from Patent EP2985353 NA coding protein psRNATarget
LQ235549.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
LQ235533.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1528 from Patent EP2985353 NA coding protein psRNATarget
LQ235439.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
JB163909.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
JB163821.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
HI403360.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1485 from Patent EP2074227 NA coding protein psRNATarget
JB163824.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1488 from Patent EP2559767 NA coding protein psRNATarget
LQ235490.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1485 from Patent EP2985353 NA coding protein psRNATarget
HI403371.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1496 from Patent EP2074227 NA coding protein psRNATarget
HI403419.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
HI403406.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:10   UCCAUUUUAGUCCCUAAAUUACUA   33

1.5 Sequence 1531 from Patent EP2074227 NA coding protein psRNATarget
LQ235536.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:10   UCCAUUUUAGUCCCUAAAUUACUA   33

1.5 Sequence 1531 from Patent EP2985353 NA coding protein psRNATarget
JB163867.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:10   UCCAUUUUAGUCCCUAAAUUACUA   33

1.5 Sequence 1531 from Patent EP2559767 NA coding protein psRNATarget
HI403265.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1390 from Patent EP2074227 NA coding protein psRNATarget
JB163726.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1390 from Patent EP2559767 NA coding protein psRNATarget
LQ235395.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1390 from Patent EP2985353 NA coding protein psRNATarget
JB163878.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1542 from Patent EP2559767 NA coding protein psRNATarget
LQ235547.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1542 from Patent EP2985353 NA coding protein psRNATarget
HI403417.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1542 from Patent EP2074227 NA coding protein psRNATarget
HI403442.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1567 from Patent EP2074227 NA coding protein psRNATarget
JB163903.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1567 from Patent EP2559767 NA coding protein psRNATarget
LQ235572.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||||||||||||||||||||*|||
targets:11   UCCAUUUUAGUCCCUAAAUUACUA   34

1.5 Sequence 1567 from Patent EP2985353 NA coding protein psRNATarget
BT085047.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|||||||||||||||||*|||
targets:1236   UCUAUUUUAGUCCCUAAAUUACUA   1259

1.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_020546793.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:3609   UCUAAUUUAGUCUCUAAAUUGCUA   3632

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:3572   UCUAAUUUAGUCUCUAAAUUGCUA   3595

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:3522   UCUAAUUUAGUCUCUAAAUUGCUA   3545

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:3447   UCUAAUUUAGUCUCUAAAUUGCUA   3470

1.5 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
BT018349.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:603   UCUAAUUUAGUCUCUAAAUUGCUA   626

1.5 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
EU941753.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=|*|||||||=|||||||||||
targets:48   UCUAAUUUAGUCUCUAAAUUGCUA   71

1.5 Zea mays clone 1469712 mRNA sequence NA coding protein psRNATarget
EU944198.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  *|=||||||*||||||||||||||
targets:469   ACUAUUUUAAUCCCUAAAUUGCUA   492

1.0 Zea mays clone 207719 mRNA sequence NA coding protein psRNATarget
EZ091785.1
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  |||*||||||*|||||||||||||
targets:95   UCCCUUUUAGCCCCUAAAUUGCUA   118

1.0 TSA: Zea mays contig27434, mRNA sequence NA coding protein psRNATarget
BT066057.2
ncRNA:24   AGGUAAAAUCAGGGAUUUAACGAU   1
  ||=*||||||||||||||||*|||
targets:811   UCUUUUUUAGUCCCUAAAUUACUA   834

1.5 Zea mays full-length cDNA clone ZM_BFb0211I17 mRNA, complete cds NA coding protein psRNATarget
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