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BaseInfo

ncRNA ID novel_zma_miR5394
Species Zea mays
Class miRNA
Genome position Chr2:200516788-200516880 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 70 - AAAACUGGAGGGGAUUGAAGGGGC - 93
Stem-loop(if miRNA) --             A   A            C           CAA
  AAAACUGGAGGGG UUG AGGGGCUAAAAU CCCUUCUUAUU   A
  ||||||||||||| ||| |||||||||||| |||||||||||
  UUUUGGCCUCCCC AAC UCCUCGAUUUUA GGGAAGAAUAA   A
UC             -   C            A           AUA
Stem-loop sequence AAAACUGGAGGGGAUUGAAGGGGCUAAAAUCCCCUUCUUAUUCAAAAAUAAAUAAGAAGGGAAUUUUAGCUCCUCCAACCCCUCCGGUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654495.2
ncRNA:24   CGGGGAAGUUAGGGGAGGUCAAAA   1
  ||||||||||||||||||=|||||
targets:1115   GCCCCUUCAAUCCCCUCCGGUUUU   1138

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget