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BaseInfo

ncRNA ID novel_zma_miR5390
Species Zea mays
Class miRNA
Genome position Chr4:130465856-130465931 [-]
Reference genome RefGen_v4
Source SRR1618883;SRR5100255;SRR5105963
Length 24
Mature sequence(if miRNA) 1 - GAUUUCUCCCCCAUGGAUCCCCUU - 24
Stem-loop(if miRNA) --   UU            U    C      U     A
  GGG  UCCAUGGGGGAG AAUC CCUUGU AUUCA A
  |||  |||||||||||| |||| |||||| |||||
  CCC  AGGUACCCCCUC UUAG GGAACG UAAGU A
UU   CU            U    A      U     C
Stem-loop sequence GGGUUUCCAUGGGGGAGUAAUCCCCUUGUUAUUCAAAACUGAAUUGCAAGGAGAUUUCUCCCCCAUGGAUCCCCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU974244.1
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=||||
targets:419   UAGGGGAUCCAUGGGGGAGGAAUC   442

1.5 Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds NA coding protein psRNATarget
EU967725.1
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=||||
targets:1061   UAGGGGAUCCAUGGGGGAGGAAUC   1084

1.5 Zea mays clone 305590 mRNA sequence NA coding protein psRNATarget
XM_008662311.2
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=||||
targets:1022   UAGGGGAUCCAUGGGGGAGGAAUC   1045

1.5 PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA NA coding protein psRNATarget
NM_001148227.2
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=|||=
targets:246   UAGGGGAUCCAUGGGGGAGGAAUU   269

2.5 Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA NA coding protein psRNATarget
BT041878.2
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=|||=
targets:246   UAGGGGAUCCAUGGGGGAGGAAUU   269

2.5 Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds NA coding protein psRNATarget
BT087775.1
ncRNA:24   UUCCCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||=|||=
targets:253   UAGGGGAUCCAUGGGGGAGGAAUU   276

2.5 Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds NA coding protein psRNATarget
LQ240751.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 6746 from Patent EP2985353 NA coding protein psRNATarget
HI409259.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 7384 from Patent EP2074227 NA coding protein psRNATarget
LQ241389.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 7384 from Patent EP2985353 NA coding protein psRNATarget
HI408621.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 6746 from Patent EP2074227 NA coding protein psRNATarget
JB169720.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 7384 from Patent EP2559767 NA coding protein psRNATarget
JB169082.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  ||||||||||||||||=||||
targets:1   GGGAUCCAUGGGGGAGGAAUC   21

1.5 Sequence 6746 from Patent EP2559767 NA coding protein psRNATarget
JB170275.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||||
targets:1   AGGAUCCAUGGGGGAGAAAUC   21

0.0 Sequence 7939 from Patent EP2559767 NA coding protein psRNATarget
LQ241944.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||||
targets:1   AGGAUCCAUGGGGGAGAAAUC   21

0.0 Sequence 7939 from Patent EP2985353 NA coding protein psRNATarget
HI409814.1
ncRNA:21   CCCUAGGUACCCCCUCUUUAG   1
  *||||||||||||||||||||
targets:1   AGGAUCCAUGGGGGAGAAAUC   21

0.0 Sequence 7939 from Patent EP2074227 NA coding protein psRNATarget