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BaseInfo

ncRNA ID novel_zma_miR5385
Species Zea mays
Class miRNA
Genome position Chr2:212607348-212607421 [+]
Reference genome RefGen_v4
Source SRR2287165;SRR2089698;SRR2089708
Length 24
Mature sequence(if miRNA) 51 - GGGGGCUCCAACCGAGGUUAGCAU - 74
Stem-loop(if miRNA) --     UU  -UC  C  C       U      UAUG
  GUUAG  UU   UG GA CCCUUAG CAUAUA    U
  |||||  ||   || || ||||||| ||||||
  CGAUU  AG   AC CU GGGGGUC GUGUGU    A
UA     GG  CCA  -  C       U      UGCG
Stem-loop sequence GUUAGUUUUUCUGCGACCCCUUAGUCAUAUAUAUGUAGCGUUGUGUGUCUGGGGGCUCCAACCGAGGUUAGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020537903.1
ncRNA:24   UACGAUUGGAGCCAACCUCGGGGG   1
  |*||||||||||||||||||||||
targets:109   ACGCUAACCUCGGUUGGAGCCCCC   132

0.0 PREDICTED: Zea mays auxin-responsive protein SAUR72-like (LOC109939618), mRNA NA coding protein psRNATarget
BT061256.1
ncRNA:24   UACGAUUGGAGCCAACCUCGGGGG   1
  |*|*||||||||*||||||||||*
targets:1067   ACGAUAACCUCGUUUGGAGCCCCA   1090

2.5 Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds NA coding protein psRNATarget