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BaseInfo

ncRNA ID	novel_zma_miR5382
Species	Zea mays
Class	miRNA
Genome position	Chr4:159321792-159321892 [-]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - ACAUGUGGAUUGAGAUAAAUACUA - 24
Stem-loop(if miRNA)	--     AAC                       A    UAC     C      GUAUU   CUUAAUCCAUAUGUAUUGAGGUG AUUG   UGUAA UUAA   |||||   ||||||||||||||||||||||| ||||   ||||| |||A   CAUAA   GAGUUAGGUGUACAUAACUCCAU UAAU   ACAUU AAUC AU     AUA                       C    UCC     U
Stem-loop sequence	GUAUUAACCUUAAUCCAUAUGUAUUGAGGUGAAUUGUACUGUAACUUAAACUAAUUUACACCUUAAUCUACCUCAAUACAUGUGGAUUGAGAUAAAUACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402966.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|||||||||=|||||| targets:2   UAGUAUUGAUCUCAAUCUACAUGU   25 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|||||||||=|||||| targets:2   UAGUAUUGAUCUCAAUCUACAUGU   25 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|||||||||=|||||| targets:2   UAGUAUUGAUCUCAAUCUACAUGU   25 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:1812   UAGUAUUGACCUCAAUCCACAUGU   1835 Target Full Sequence	2.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:1811   UAGUAUUGACCUCAAUCCACAUGU   1834 Target Full Sequence	2.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUAACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
JB163822.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUAACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
JB163780.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
HI403361.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUAACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
HI403319.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:3   UAGUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
HI403017.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
JB163536.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
HI403075.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
JB163478.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUCACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
JB163457.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUCACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
HI402996.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||||||*|*|||||||||||||| targets:2   UAGUAUUCACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239082.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |*|||||*|||||||||||||||| targets:2   UUGUAUUCAUCUCAAUCCACAUGU   25 Target Full Sequence	1.0	Sequence 5077 from Patent EP2985353	NA	coding protein	psRNATarget
JB167413.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |*|||||*|||||||||||||||| targets:2   UUGUAUUCAUCUCAAUCCACAUGU   25 Target Full Sequence	1.0	Sequence 5077 from Patent EP2559767	NA	coding protein	psRNATarget
HI406952.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |*|||||*|||||||||||||||| targets:2   UUGUAUUCAUCUCAAUCCACAUGU   25 Target Full Sequence	1.0	Sequence 5077 from Patent EP2074227	NA	coding protein	psRNATarget
EU972082.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*=||||||||||||||* targets:1533   UAGCAUUCGUCUCAAUCCACAUGC   1556 Target Full Sequence	3.0	Zea mays clone 374569 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975872.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*=||||||||||||||* targets:1525   UAGCAUUCGUCUCAAUCCACAUGC   1548 Target Full Sequence	3.0	Zea mays clone 503689 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT039040.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*=||||||||||||||* targets:1559   UAGCAUUCGUCUCAAUCCACAUGC   1582 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0366D04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147069.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*=||||||||||||||* targets:1559   UAGCAUUCGUCUCAAUCCACAUGC   1582 Target Full Sequence	3.0	Zea mays uncharacterized LOC100272606 (LOC100272606), mRNA	NA	coding protein	psRNATarget
BT085393.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   *|*||||*|||||||||||||||* targets:1556   CAUUAUUGAUCUCAAUCCACAUGA   1579 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   ||*||||*|*|||||||||||||| targets:3   UAAUAUUGACCUCAAUCCACAUGU   26 Target Full Sequence	2.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*|*|||||||||||||| targets:2   UAGCAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*|*|||||||||||||| targets:2   UAGCAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |||*|||*|*|||||||||||||| targets:2   UAGCAUUGACCUCAAUCCACAUGU   25 Target Full Sequence	2.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001112411.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |*||*||*|||||||||||=|||| targets:1621   UCGUUUUGAUCUCAAUCCAUAUGU   1644 Target Full Sequence	2.5	Zea mays uncharacterized LOC732794 (IDP506), mRNA	NA	coding protein	psRNATarget
AF277454.1	ncRNA:24   AUCAUAAAUAGAGUUAGGUGUACA   1   |*||*||*|||||||||||=|||| targets:1621   UCGUUUUGAUCUCAAUCCAUAUGU   1644 Target Full Sequence	2.5	Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds	NA	coding protein	psRNATarget