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BaseInfo

ncRNA ID	novel_zma_miR5379
Species	Zea mays
Class	miRNA
Genome position	Chr1:81382107-81382180 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	23
Mature sequence(if miRNA)	1 - GUGGAUUGAGGUGUAUUGAGAGA - 23
Stem-loop(if miRNA)	--   GA  -    U U     -   A  AUUU     A   GUG  UU GAGG G AUUGA GAG GU    GAUCU U   |||  || |||| | ||||| ||| ||    ||||| U   CAC  AA CUCC C UAACU CUC CA    UUAGG G CU   AA  U    - -     U   C  -CAU     G
Stem-loop sequence	GUGGAUUGAGGUGUAUUGAGAGAGUAUUUGAUCUAUUGGGGAUUUACACCCUCUUCAAUCCCUCUAAAACACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111447.2	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   ||||||||||||=|||||||||| targets:343   UCUCUCAAUACAUCUCAAUCCAC   365 Target Full Sequence	1.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   ||||||||||||=|||||||||| targets:1759   UCUCUCAAUACAUCUCAAUCCAC   1781 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT034601.1	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   ||||||||||||=|||||||||| targets:1940   UCUCUCAAUACAUCUCAAUCCAC   1962 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   ||||||||||||=|||||||||| targets:1940   UCUCUCAAUACAUCUCAAUCCAC   1962 Target Full Sequence	1.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   |=|||=||||||=|||||||||| targets:1421   UUUCUUAAUACAUCUCAAUCCAC   1443 Target Full Sequence	2.5	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   ||||*|||||||=|||||||||| targets:1325   UCUCCCAAUACAUCUCAAUCCAC   1347 Target Full Sequence	2.5	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ106648.1	ncRNA:23   AGAGAGUUAUGUGGAGUUAGGUG   1   |*|=|||||||||=||||||||| targets:40   UAUUUCAAUACACUUCAAUCCAC   62 Target Full Sequence	1.5	TSA: Zea mays contig42306, mRNA sequence	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:23   AGAGAGUU-AUGUGGAGUUAGGUG   1   |||||*||-||||||||||||||| targets:5041   UCUCUAAAAUACACCUCAAUCCAC   5064 Target Full Sequence	3.0	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
EZ066328.1	ncRNA:23   AG--AGAGUUAUGUGGAGUUAGGUG   1   ||--|=|=|||||||=||||||||| targets:59   UCCAUUUUAAUACACUUCAAUCCAC   83 Target Full Sequence	2.5	TSA: Zea mays contig01962, mRNA sequence	NA	coding protein	psRNATarget
BT016884.1	ncRNA:23   AG--AGAGUUAUGUGGAGUUAGGUG   1   ||--|=|=|||||||=||||||||| targets:241   UCCAUUUUAAUACACUUCAAUCCAC   265 Target Full Sequence	2.5	Zea mays clone Contig717 mRNA sequence	NA	coding protein	psRNATarget
BT084613.2	ncRNA:23   AGA--GAGUUAUGUGGAGUUAGGUG   1   *||--|*|||||||||||||||||= targets:76   GCUACCCCAAUACACCUCAAUCCAU   100 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0145P16 mRNA, complete cds	NA	coding protein	psRNATarget
BT069846.2	ncRNA:23   AGA--GAGUUAUGUGGAGUUAGGUG   1   *||--|*|||||||||||||||||= targets:77   GCUACCCCAAUACACCUCAAUCCAU   101 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0304I20 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:20   GAGU-UAUGUGGAGUUAGGUG   1   ||||-||*||||||||||||| targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	3.0	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:20   GAGU-UAUGUGGAGUUAGGUG   1   ||||-||*||||||||||||| targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	3.0	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
JB163470.1	ncRNA:20   GAGU-UAUGUGGAGUUAGGUG   1   ||||-||*||||||||||||| targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	3.0	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget