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BaseInfo

ncRNA ID novel_zma_miR5371
Species Zea mays
Class miRNA
Genome position Chr1:74919922-74920051 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - CCGGAACAACCGAACAGGGCCUAA - 24
Stem-loop(if miRNA) --   G             A     -AU    - A     -CA        --CAUCAAAA    UA
  AGG UCUGUUCGGUUGU CCGGA   GAGC C GGAUU   UUCUAGCU          UCUA  U
  ||| ||||||||||||| |||||   |||| | |||||   ||||||||          ||||  A
  UCC GGACAAGCCAACA GGCCU   CUCG G CCUAA   AGGAUCGG          AGAU  A
AA   G             A     AAC    U G     UUA        CCUAAUGAAG    UA
Stem-loop sequence AGGGUCUGUUCGGUUGUACCGGAAUGAGCCAGGAUUCAUUCUAGCUCAUCAAAAUCUAUAUAAAUUAGAGAAGUAAUCCGGCUAGGAAUUAAUCCGGUGCUCCAAUCCGGAACAACCGAACAGGGCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT041278.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  ||||||||||||||||||||||||
targets:386   UUAGGCCCUGUUCGGUUGUUCCGG   409

0.0 Zea mays full-length cDNA clone ZM_BFb0135F17 mRNA, complete cds NA coding protein psRNATarget
XM_020549609.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  ||||||||||||||||||||||||
targets:1256   UUAGGCCCUGUUCGGUUGUUCCGG   1279

0.0 PREDICTED: Zea mays hypothetical protein (LOC100275396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  ||||||||||||||||||||||||
targets:794   UUAGGCCCUGUUCGGUUGUUCCGG   817

0.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  ||||||||||||||||||||||||
targets:889   UUAGGCCCUGUUCGGUUGUUCCGG   912

0.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235249.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1244 from Patent EP2985353 NA coding protein psRNATarget
HI403008.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1133 from Patent EP2074227 NA coding protein psRNATarget
JB163469.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1133 from Patent EP2559767 NA coding protein psRNATarget
JB163581.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1245 from Patent EP2559767 NA coding protein psRNATarget
HI403046.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1171 from Patent EP2074227 NA coding protein psRNATarget
HI403035.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1160 from Patent EP2074227 NA coding protein psRNATarget
LQ235165.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1160 from Patent EP2985353 NA coding protein psRNATarget
JB163463.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1127 from Patent EP2559767 NA coding protein psRNATarget
JB163580.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1244 from Patent EP2559767 NA coding protein psRNATarget
JB163542.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1206 from Patent EP2559767 NA coding protein psRNATarget
HI403068.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1193 from Patent EP2074227 NA coding protein psRNATarget
LQ235211.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1206 from Patent EP2985353 NA coding protein psRNATarget
JB163529.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1193 from Patent EP2559767 NA coding protein psRNATarget
HI403081.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1206 from Patent EP2074227 NA coding protein psRNATarget
LQ235198.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1193 from Patent EP2985353 NA coding protein psRNATarget
HI403120.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1245 from Patent EP2074227 NA coding protein psRNATarget
LQ235138.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1133 from Patent EP2985353 NA coding protein psRNATarget
LQ235250.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1245 from Patent EP2985353 NA coding protein psRNATarget
LQ235132.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1127 from Patent EP2985353 NA coding protein psRNATarget
LQ235176.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1171 from Patent EP2985353 NA coding protein psRNATarget
JB163507.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1171 from Patent EP2559767 NA coding protein psRNATarget
HI403119.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1244 from Patent EP2074227 NA coding protein psRNATarget
HI403002.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1127 from Patent EP2074227 NA coding protein psRNATarget
JB163496.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||||||||||||||||||||
targets:1   UAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1160 from Patent EP2559767 NA coding protein psRNATarget
JB163521.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||=|||||||||||||||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1185 from Patent EP2559767 NA coding protein psRNATarget
LQ235190.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||=|||||||||||||||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1185 from Patent EP2985353 NA coding protein psRNATarget
HI403060.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  |||||=|||||||||||||||||
targets:1   UAGGCUCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1185 from Patent EP2074227 NA coding protein psRNATarget
XM_008658796.2
ncRNA:24   AA-UCCGGGACAAGCCAACAAGGCC   1
  ||-||||||||||||||||||||||
targets:2189   UUGAGGCCCUGUUCGGUUGUUCCGG   2213

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658795.2
ncRNA:24   AA-UCCGGGACAAGCCAACAAGGCC   1
  ||-||||||||||||||||||||||
targets:2206   UUGAGGCCCUGUUCGGUUGUUCCGG   2230

0.0 PREDICTED: Zea mays hypothetical protein (LOC103636441), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235195.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1190 from Patent EP2985353 NA coding protein psRNATarget
LQ235258.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1253 from Patent EP2985353 NA coding protein psRNATarget
JB163589.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1253 from Patent EP2559767 NA coding protein psRNATarget
JB163526.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1190 from Patent EP2559767 NA coding protein psRNATarget
JB163595.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1259 from Patent EP2559767 NA coding protein psRNATarget
LQ235264.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1259 from Patent EP2985353 NA coding protein psRNATarget
HI403134.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1259 from Patent EP2074227 NA coding protein psRNATarget
LQ235089.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1084 from Patent EP2985353 NA coding protein psRNATarget
HI403128.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1253 from Patent EP2074227 NA coding protein psRNATarget
HI403065.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1190 from Patent EP2074227 NA coding protein psRNATarget
JB163420.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1084 from Patent EP2559767 NA coding protein psRNATarget
HI402959.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  *||||||||||||||||||||||
targets:1   AAGGCCCUGUUCGGUUGUUCCGG   23

0.0 Sequence 1084 from Patent EP2074227 NA coding protein psRNATarget
JB163544.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1208 from Patent EP2559767 NA coding protein psRNATarget
HI403083.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1208 from Patent EP2074227 NA coding protein psRNATarget
LQ235213.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*||||||||||||||||||
targets:1   UAGGGCCUGUUCGGUUGUUCCGG   23

1.0 Sequence 1208 from Patent EP2985353 NA coding protein psRNATarget
BT043254.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  **||||=|||||*|||||||||||
targets:1260   GAAGGCUCUGUUAGGUUGUUCCGG   1283

2.5 Zea mays full-length cDNA clone ZM_BFc0133D22 mRNA, complete cds NA coding protein psRNATarget
JB163374.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*|||||||||||||*||||
targets:1   UAGGGCCUGUUCGGUUGUACCGG   23

2.5 Sequence 1038 from Patent EP2559767 NA coding protein psRNATarget
HI402913.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*|||||||||||||*||||
targets:1   UAGGGCCUGUUCGGUUGUACCGG   23

2.5 Sequence 1038 from Patent EP2074227 NA coding protein psRNATarget
LQ235043.1
ncRNA:23   AUCCGGGACAAGCCAACAAGGCC   1
  ||||*|||||||||||||*||||
targets:1   UAGGGCCUGUUCGGUUGUACCGG   23

2.5 Sequence 1038 from Patent EP2985353 NA coding protein psRNATarget
JB167773.1
ncRNA:24   AAU-CCGGGACAAGCCAACAAGGCC   1
  |||-||*|||||||||||||*||||
targets:11   UUAAGGGCCUGUUCGGUUGUACCGG   35

2.5 Sequence 5437 from Patent EP2559767 NA coding protein psRNATarget
LQ239442.1
ncRNA:24   AAU-CCGGGACAAGCCAACAAGGCC   1
  |||-||*|||||||||||||*||||
targets:11   UUAAGGGCCUGUUCGGUUGUACCGG   35

2.5 Sequence 5437 from Patent EP2985353 NA coding protein psRNATarget
HI407312.1
ncRNA:24   AAU-CCGGGACAAGCCAACAAGGCC   1
  |||-||*|||||||||||||*||||
targets:11   UUAAGGGCCUGUUCGGUUGUACCGG   35

2.5 Sequence 5437 from Patent EP2074227 NA coding protein psRNATarget
XM_020551773.1
ncRNA:24   AAU-CCGGGACAAGCCAACAAGGCC   1
  |||-||*|||||||||||||*||||
targets:2094   UUAAGGGCCUGUUCGGUUGUACCGG   2118

2.5 PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA NA coding protein psRNATarget
EU962159.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  |*|||**|||||||||||||||||
targets:634   UAAGGGACUGUUCGGUUGUUCCGG   657

2.0 Zea mays clone 240647 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget
EU964173.1
ncRNA:24   AAUCCGGGACAAGCCAACAAGGCC   1
  |*|||**|||||||||||||||||
targets:636   UAAGGGACUGUUCGGUUGUUCCGG   659

2.0 Zea mays clone 276459 metallothionein-like protein type 2 mRNA, complete cds NA coding protein psRNATarget