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BaseInfo

ncRNA ID	novel_zma_miR5368
Species	Zea mays
Class	miRNA
Genome position	Chr1:84157138-84157206 [-]
Reference genome	RefGen_v4
Source	SRR2287165;SRR2647343;SRR2089702
Length	24
Mature sequence(if miRNA)	46 - AUGCGUUGCAACGGGGACAUAUAA - 69
Stem-loop(if miRNA)	--A                         U  CG U    UGCGUUGCAACGGGGACAUAUAAUA CA  G A    ||||||||||||||||||||||||| ||  |    ACGCAACGUUGCCUCUGUAUAUUAU GU  U A GAC                         -  AU C
Stem-loop sequence	AUGCGUUGCAACGGGGACAUAUAAUAUCACGGUAACUUAUGUAUUAUAUGUCUCCGUUGCAACGCACAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239381.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||||||||||||||||| targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81 Target Full Sequence	0.0	Sequence 5376 from Patent EP2985353	NA	coding protein	psRNATarget
HI407251.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||||||||||||||||| targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81 Target Full Sequence	0.0	Sequence 5376 from Patent EP2074227	NA	coding protein	psRNATarget
JB167712.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||||||||||||||||| targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81 Target Full Sequence	0.0	Sequence 5376 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546475.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||||||||||||||||| targets:1290   UUAUAUGUCCCCGUUGCAACGCAU   1313 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109943445 (LOC109943445), mRNA	NA	coding protein	psRNATarget
JB169052.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75 Target Full Sequence	2.0	Sequence 6716 from Patent EP2559767	NA	coding protein	psRNATarget
HI408591.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75 Target Full Sequence	2.0	Sequence 6716 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240721.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75 Target Full Sequence	2.0	Sequence 6716 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020552623.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:835   UUAUAUGUCUCCGUUGCAACGCAC   858 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103653749 (LOC103653749), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974988.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||=||||||||||||||* targets:6   UUAUAUGUUCCCGUUGCAACGCAC   29 Target Full Sequence	2.0	Zea mays clone 462361 mRNA sequence	NA	coding protein	psRNATarget
EU973696.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:1020   UUAUAUGUCUCCGUUGCAACGCAC   1043 Target Full Sequence	2.0	Zea mays clone 406768 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546408.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||=||||||||||||||* targets:1234   UUAUAUGUUCCCGUUGCAACGCAC   1257 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636628 (LOC103636628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542748.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||||||||=|||||||||||||* targets:1184   UUAUAUGUCUCCGUUGCAACGCAC   1207 Target Full Sequence	2.0	PREDICTED: Zea mays pre-rRNA-processing protein TSR1 homolog (LOC103635667), mRNA	NA	coding protein	psRNATarget
NM_001176192.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   *|||||||=||||||||||||||| targets:2437   AUAUAUGUUCCCGUUGCAACGCAU   2460 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100383544), mRNA	NA	coding protein	psRNATarget
BT067534.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   *|||||||=||||||||||||||| targets:2437   AUAUAUGUUCCCGUUGCAACGCAU   2460 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0085M01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658389.2	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||=||||||||||||||* targets:4   UUAUAUGUUCCCGUUGCAACGCAC   27 Target Full Sequence	2.0	PREDICTED: Zea mays probable inactive leucine-rich repeat receptor kinase XIAO (LOC103636020), mRNA	NA	coding protein	psRNATarget
EZ084982.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:50   UUAUAUGUUUCCGUUGCAACGCAC   73 Target Full Sequence	3.0	TSA: Zea mays contig20626, mRNA sequence	NA	coding protein	psRNATarget
EZ085984.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:60   UUAUAUGUUUCCGUUGCAACGCAC   83 Target Full Sequence	3.0	TSA: Zea mays contig21630, mRNA sequence	NA	coding protein	psRNATarget
EZ065089.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:63   UUAUAUGUUUCCGUUGCAACGCAC   86 Target Full Sequence	3.0	TSA: Zea mays contig00721, mRNA sequence	NA	coding protein	psRNATarget
EU974737.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:738   UUAUAUGUUUCCGUUGCAACGCAA   761 Target Full Sequence	3.0	Zea mays clone 457149 mRNA sequence	NA	coding protein	psRNATarget
XM_020548644.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:679   UUAUAUGUUUCCGUUGCAACGCAC   702 Target Full Sequence	3.0	PREDICTED: Zea mays mitochondrial adenine nucleotide transporter ADNT1-like (LOC103649350), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT083780.2	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:78   UUAUAUGUUUCCGUUGCAACGCAC   101 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0039F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177118.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:78   UUAUAUGUUUCCGUUGCAACGCAC   101 Target Full Sequence	3.0	Zea mays uncharacterized LOC100384622 (LOC100384622), mRNA	NA	coding protein	psRNATarget
BT069760.2	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:1462   UUAUAUGUUUCCGUUGCAACGCAC   1485 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0229D16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541369.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||||==|||||||||||||* targets:3408   UUAUAUGUUUCCGUUGCAACGCAC   3431 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103633193 (LOC103633193), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545825.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   *|||||||==|||||||||||||* targets:3277   AUAUAUGUUUCCGUUGCAACGCAC   3300 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020548245.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   |||*||||=||||||||||||||* targets:4210   UUACAUGUUCCCGUUGCAACGCAC   4233 Target Full Sequence	2.0	PREDICTED: Zea mays MADS-box transcription factor 31 (LOC103646272), mRNA	NA	coding protein	psRNATarget
XM_020546600.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||*|=||||||||||||||* targets:2386   UUAUAUAUUCCCGUUGCAACGCAC   2409 Target Full Sequence	3.0	PREDICTED: Zea mays wall-associated receptor kinase 3-like (LOC103645132), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546598.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||||||*|=||||||||||||||* targets:2520   UUAUAUAUUCCCGUUGCAACGCAC   2543 Target Full Sequence	3.0	PREDICTED: Zea mays wall-associated receptor kinase 3-like (LOC103645132), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI408611.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   **|||*|||||||||||||||||| targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57 Target Full Sequence	1.0	Sequence 6736 from Patent EP2074227	NA	coding protein	psRNATarget
JB169072.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   **|||*|||||||||||||||||| targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57 Target Full Sequence	1.0	Sequence 6736 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240741.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   **|||*|||||||||||||||||| targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57 Target Full Sequence	1.0	Sequence 6736 from Patent EP2985353	NA	coding protein	psRNATarget
EU949520.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   **||||||==|||||||||||||* targets:340   CGAUAUGUUUCCGUUGCAACGCAC   363 Target Full Sequence	3.0	Zea mays clone 422605 mRNA sequence	NA	coding protein	psRNATarget
XM_020546143.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   ||*|||*|=||||||||||||||* targets:3662   UUUUAUCUUCCCGUUGCAACGCAC   3685 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103642026 (LOC103642026), mRNA	NA	coding protein	psRNATarget
XM_020539915.1	ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1   **|*||||==|||||||||||||* targets:145   GGACAUGUUUCCGUUGCAACGCAC   168 Target Full Sequence	3.0	PREDICTED: Zea mays aspartic proteinase oryzasin-1-like (LOC103631003), mRNA	NA	coding protein	psRNATarget
XM_008655764.2	ncRNA:24   AAUA--UACAG-GGGCAACGUUGCGUA   1   *|=|--=||||-||||||||||||||* targets:615   CUGUCAGUGUCACCCGUUGCAACGCAC   641 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-glucuronic acid decarboxylase 5-like (LOC103634175), partial mRNA	NA	coding protein	psRNATarget