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BaseInfo

ncRNA ID	novel_zma_miR5367
Species	Zea mays
Class	miRNA
Genome position	Chr10:64147755-64147818 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	41 - GAUUUAAUCCCCCUCAAUCCACUU - 64
Stem-loop(if miRNA)	--       A   -A     CU    --A   UC   GUGGAUU GAG  GGAUU  AUUC   AUU  G   ||||||| |||  |||||  ||||   |||   CACCUAA CUC  CCUAA  UAGG   UGA  A UU       -   CC     UU    GAG   UU
Stem-loop sequence	GUGGAUUAGAGAGGAUUCUAUUCAAUUUCGAUUAGUGAGGGAUUUAAUCCCCCUCAAUCCACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068750.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||||||||||||||||||||||| targets:76   AAGUGGAUUGAGGGGGAUUAAAUC   99 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds	NA	coding protein	psRNATarget
EU947467.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |**||||||||||||||||||||| targets:1232   AUAUGGAUUGAGGGGGAUUAAAUC   1255 Target Full Sequence	0.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |**||||||||||||||||||||| targets:1935   AUAUGGAUUGAGGGGGAUUAAAUC   1958 Target Full Sequence	0.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EZ106495.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   =||-|||||||||||||||||||= targets:54   GAG-GGAUUGAGGGGGAUUAAAUU   76 Target Full Sequence	1.0	TSA: Zea mays contig42153, mRNA sequence	NA	coding protein	psRNATarget
XM_008670947.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   =||||*|||||*|||||||||||| targets:593   GAGUGAAUUGAAGGGGAUUAAAUC   616 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget
EZ059519.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |=|*|||||||*|||||||||||| targets:437   AGGGGGAUUGAAGGGGAUUAAAUC   460 Target Full Sequence	1.5	TSA: Zea mays contig60641, mRNA sequence	NA	coding protein	psRNATarget
BT041883.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*||||||=*|||||||||||| targets:811   AAGCGGAUUGGAGGGGAUUAAAUC   834 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*||||||=*|||||||||||| targets:1110   AAGCGGAUUGGAGGGGAUUAAAUC   1133 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU963709.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   =|||*|||||||||*||||||||| targets:1427   GAGUAGAUUGAGGGAGAUUAAAUC   1450 Target Full Sequence	1.5	Zea mays clone 272112 ribokinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156085.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   =|||*|||||||||*||||||||| targets:1427   GAGUAGAUUGAGGGAGAUUAAAUC   1450 Target Full Sequence	1.5	Zea mays ribokinase (LOC100283183), mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   =||*|*|||||||||||||||||| targets:934   GAGAGAAUUGAGGGGGAUUAAAUC   957 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*||||||=*|||||||||||| targets:1282   AAGGGGAUUGGAGGGGAUUAAAUC   1305 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*||||||=*|||||||||||| targets:2139   AAGCGGAUUGGAGGGGAUUAAAUC   2162 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*||||||=*|||||||||||| targets:2140   AAGCGGAUUGGAGGGGAUUAAAUC   2163 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |=|*||||||=*|||||||||||| targets:18   AGGAGGAUUGGAGGGGAUUAAAUC   41 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |=|*||||||=*|||||||||||| targets:3214   AGGGGGAUUGGAGGGGAUUAAAUC   3237 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
EZ080102.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**||||||||*|||||||||| targets:37   AAGGAGAUUGAGGAGGAUUAAAUC   60 Target Full Sequence	1.5	TSA: Zea mays contig15741, mRNA sequence	NA	coding protein	psRNATarget
EU967673.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   ||**|||||||||||*|||||||| targets:887   AAUGGGAUUGAGGGGAAUUAAAUC   910 Target Full Sequence	1.5	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   ||**|||||||||||*|||||||| targets:1013   AAUGGGAUUGAGGGGAAUUAAAUC   1036 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||*|||||*||*||||||||||| targets:895   AAGGGGAUUCAGAGGGAUUAAAUC   918 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
BT055781.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**||||||||*|||||||||| targets:1554   AAGGAGAUUGAGGAGGAUUAAAUC   1577 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**||||||||*|||||||||| targets:1554   AAGGAGAUUGAGGAGGAUUAAAUC   1577 Target Full Sequence	1.5	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT061569.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**||||||||*|||||||||| targets:1743   AAGGAGAUUGAGGAGGAUUAAAUC   1766 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||--||||||||*|||||||||| targets:2984   AAG--GAUUGAGGAGGAUUAAAUC   3005 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||--||||||||*|||||||||| targets:2989   AAG--GAUUGAGGAGGAUUAAAUC   3010 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064784.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   *|**|||||||*|||||||||||| targets:812   CACCGGAUUGAUGGGGAUUAAAUC   835 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132E20 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**|||||=*|||||||||||| targets:24   AAGGAGAUUGGAGGGGAUUAAAUC   47 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**|||||=*|||||||||||| targets:24   AAGGAGAUUGGAGGGGAUUAAAUC   47 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UUCACCUAACUCCCCCUAAUUUAG   1   |||**|||||=*|||||||||||| targets:24   AAGGAGAUUGGAGGGGAUUAAAUC   47 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   UUC--ACCUAACUCCCCCUAAUUUAG   1   |=|--||*||*||||||||||||||| targets:3572   AGGGCUGAAUCGAGGGGGAUUAAAUC   3597 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   UUC--ACCUAACUCCCCCUAAUUUAG   1   |=|--||*||*||||||||||||||| targets:3572   AGGGCUGAAUCGAGGGGGAUUAAAUC   3597 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget