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BaseInfo

ncRNA ID	novel_zma_miR5366
Species	Zea mays
Class	miRNA
Genome position	Chr10:86423490-86423621 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - ACGAUUUCUAGUGACGGUUUUCUU - 24
Stem-loop(if miRNA)	--        C                U   C                         G  G        GAAAACCG CACUAGAAAUCGUAUU CUA UGGCGGUUCCUUAAGAAAACCGCCA UA AAAUCC   |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| || |||||A   CUUUUGGC GUGAUCUUUAGCAUAA GAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGU UU        A                -   C                         G  G
Stem-loop sequence	GAAAACCGCCACUAGAAAUCGUAUUUCUACUGGCGGUUCCUUAAGAAAACCGCCAGUAGAAAUCCAUGAUUUGUAGUGGCGGUUUUCUUAAGGAACCGCCACUAGAAUACGAUUUCUAGUGACGGUUUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238012.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:34   AAGAAAACCGCCACUAGAAAUCGU   57 Target Full Sequence	1.0	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
JB166343.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:34   AAGAAAACCGCCACUAGAAAUCGU   57 Target Full Sequence	1.0	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
HI405882.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:34   AAGAAAACCGCCACUAGAAAUCGU   57 Target Full Sequence	1.0	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:12   AAGAAAACCGCCACUAGAAAUCGU   35 Target Full Sequence	1.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||||||||||||||*| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:12   AAGAAAACCGCCACUAGAAAUCGU   35 Target Full Sequence	1.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||||||||||||||*| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||||||||||||||*| targets:12   AAGAAAACCGUCACUAGAAAUCAU   35 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*||||||||||||| targets:12   AAGAAAACCGCCACUAGAAAUCGU   35 Target Full Sequence	1.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	2.5	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	2.5	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:73   AAGAAAACCGCCACUAGAAAUCAU   96 Target Full Sequence	2.5	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||||||||||*|||||||||||*| targets:12   AAGAAAACCGCCACUAGAAAUCAU   35 Target Full Sequence	2.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||-|=|||||*|||||||||||*| targets:31   AA-AGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	2.5	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||-|=|||||*|||||||||||*| targets:31   AA-AGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	2.5	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UUCUUUUGGCAGUGAUCUUUAGCA   1   ||-|=|||||*|||||||||||*| targets:31   AA-AGAACCGCCACUAGAAAUCAU   53 Target Full Sequence	2.5	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget