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BaseInfo

ncRNA ID	novel_zma_miR5364
Species	Zea mays
Class	miRNA
Genome position	Chr4:215592604-215592676 [-]
Reference genome	RefGen_v4
Source	SRR1618883
Length	21
Mature sequence(if miRNA)	1 - UUUUAGCCUCUCUAAUCCCCU - 21
Stem-loop(if miRNA)	--   C      -         CCC    C      A   GGG UUGGAG GGCUAGAAU   CUUC UAUUCA A   ||| |||||| |||||||||   |||| ||||||   CCC AAUCUC CCGAUUUUA   GAAG AUAAGU A UC   U      U         AUA    A      U
Stem-loop sequence	GGGCUUGGAGGGCUAGAAUCCCCUUCCUAUUCAAAAUUGAAUAAGAAGAUAAUUUUAGCCUCUCUAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651784.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956908.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   |||*||||=|||||||||||| targets:1006   AGGAGAUUGGAGAGGCUAAAA   1026 Target Full Sequence	2.5	Zea mays clone 1577150 mRNA sequence	NA	coding protein	psRNATarget
HI402993.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
JB163454.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008647699.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   |**|||||=|||||||||||| targets:1816   AUAGGAUUGGAGAGGCUAAAA   1836 Target Full Sequence	2.5	PREDICTED: Zea mays calcium uptake protein, mitochondrial (LOC103627407), mRNA	NA	coding protein	psRNATarget