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BaseInfo

ncRNA ID	novel_zma_miR5360
Species	Zea mays
Class	miRNA
Genome position	Chr4:224155324-224155412 [-]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	66 - UAACUGUGUCACACUUUGCCUAAG - 89
Stem-loop(if miRNA)	--     G                -------------        CG   G   UAACU UGUCACACUUUGCCUA             AGGUUAGU  UUC A   ||||| ||||||||||||||||             ||||||||  ||| A   AUUGA ACGGUGUGAAACGGAU             UCCAAUCA  AAG U GG     -                UGAAAAGACGGAU        AG   U
Stem-loop sequence	UAACUGUGUCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403286.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||||||||||||=|||||||| targets:86   CUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||=||||||||=|||||||| targets:83   CUUAGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||=||||||||=|||||||| targets:83   CUUAGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||=||||||||=|||||||| targets:83   CUUAGGUAAAGUGUGGCACAGUUA   106 Target Full Sequence	2.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   =||||||||||||||=|||||||| targets:86   UUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   =||||||||||||||=|||||||| targets:86   UUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   =||||||||||||||=|||||||| targets:86   UUUAGGCAAAGUGUGGCACAGUUA   109 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||||||||||||||||*||| targets:1564   CUUAGGCAAAGUGUGACACAUUUA   1587 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||||||||||||||||*||| targets:866   CUUAGGCAAAGUGUGACACAUUUA   889 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||||||||||||||||*||| targets:3206   CUUAGGCAAAGUGUGACACAUUUA   3229 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||||||||||||||||*||| targets:3334   CUUAGGCAAAGUGUGACACAUUUA   3357 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||||||||||||||||*||| targets:3341   CUUAGGCAAAGUGUGACACAUUUA   3364 Target Full Sequence	1.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT062066.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||||=|||||||||||||*||| targets:1591   CUUAGGUAAAGUGUGACACAUUUA   1614 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   |||||*|||||||||=|||||||| targets:2473   CUUAGCCAAAGUGUGGCACAGUUA   2496 Target Full Sequence	2.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   ||||*|=||||||||||||||||| targets:3663   CUUAUGUAAAGUGUGACACAGUUA   3686 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
EU945129.1	ncRNA:24   GAAUCCGUUUCACACUGUGUCAAU   1   =|||*|=||||||||||||||||| targets:615   UUUAUGUAAAGUGUGACACAGUUA   638 Target Full Sequence	1.0	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget