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BaseInfo

ncRNA ID novel_zma_miR5357
Species Zea mays
Class miRNA
Genome position Chr1:230713641-230713752 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 23
Mature sequence(if miRNA) 90 - AAAUUGAAUAAGGAGAGGAUUUU - 112
Stem-loop(if miRNA) --AAA              G       C C  CA      C       C      U
     UUGAAUAAGGAGAG AUUUUAG C CU  AAUCCC UCCGGUU UGUGGC G
     |||||||||||||| ||||||| | ||  |||||| ||||||| |||||| G
     AAUUUAUUCUUCUU UAAAAUC G GA  UUAGGG AGGCUAA ACACUG C
AUUAA              G       A U  AG      -       A      A
Stem-loop sequence AAAUUGAAUAAGGAGAGGAUUUUAGCCCCUCAAAUCCCCUCCGGUUCUGUGGCUGGCAGUCACAAAAUCGGAGGGAUUGAAGUGACUAAAAUGUUCUUCUUAUUUAAAAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008662350.2
ncRNA:23   UUUUAGGAGAGGAAUAAGUUAAA   1
  |||||||*|||=|||||||||||
targets:5243   AAAAUCCCCUCUUUAUUCAAUUU   5265

2.5 PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008664337.2
ncRNA:23   UUUUAGGAGAGGAAUAAGUUAAA   1
  |=|||||*||=||||||||||||
targets:2051   AGAAUCCCCUUCUUAUUCAAUUU   2073

2.5 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget