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BaseInfo

ncRNA ID novel_zma_miR5353
Species Zea mays
Class miRNA
Genome position Chr1:296175461-296175582 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 23
Mature sequence(if miRNA) 1 - AUUCCUGAAGAAGCGAACAGGCC - 23
Stem-loop(if miRNA) --        -G      C   UUG      U   A A     U   -  --------------     CU
  CCUGUUCG  UUUUCA GGA   GAGCCU GAA U GUUCC GGC CA              AAUUA  U
  ||||||||  |||||| |||   |||||| ||| | ||||| ||| ||              |||||
  GGACAAGC  AGAAGU CCU   CUUGGG CUU A UAAGG UCG GU              UUAAU  C
CC        GA      -   -UA      -   A A     -   A  AAUUUUAAAUAUAU     CU
Stem-loop sequence CCUGUUCGGUUUUCACGGAUUGGAGCCUUGAAAUAGUUCCUGGCCAAAUUACUUCUCUAAUUUAUAUAAAUUUUAAUGAGCUGGAAUAAAUUCGGGUUCAUUCCUGAAGAAGCGAACAGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546999.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:553   GGCCUGUUCGCUUCUUCAGGAAU   575

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547000.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:553   GGCCUGUUCGCUUCUUCAGGAAU   575

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546998.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:553   GGCCUGUUCGCUUCUUCAGGAAU   575

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547015.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X18, mRNA NA coding protein psRNATarget
XM_020547006.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020547004.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547012.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X15, mRNA NA coding protein psRNATarget
XM_020547005.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020547003.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547001.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547002.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  |||||||||||||||||||||||
targets:552   GGCCUGUUCGCUUCUUCAGGAAU   574

0.0 PREDICTED: Zea mays disease resistance protein RPP13-like (LOC103645703), transcript variant X5, mRNA NA coding protein psRNATarget
EZ113379.1
ncRNA:23   CCGGACAAGCGAAGAAGUCCUUA   1
  **|=|||||*|||||||||||*|
targets:107   CACUUGUUCUCUUCUUCAGGACU   129

2.5 TSA: Zea mays contig49040, mRNA sequence NA coding protein psRNATarget
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