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BaseInfo

ncRNA ID novel_zma_miR5351
Species Zea mays
Class miRNA
Genome position Chr1:302480906-302480989 [-]
Reference genome RefGen_v4
Source SRR2287165;SRR5451004
Length 24
Mature sequence(if miRNA) 61 - UCCAUAUGGAUUGAGGAGGAUUGA - 84
Stem-loop(if miRNA) --                A      -A         A  CCC
  UCCAUAUGGAUUGAGG GGAUUG  AGGGGUUUU AU   U
  |||||||||||||||| ||||||  ||||||||| ||   A
  AGGUAUACCUAACUUC CCUAAC  UCCCUAAAA UG   G
UU                C      CC         C  AAU
Stem-loop sequence UCCAUAUGGAUUGAGGAGGAUUGAAGGGGUUUUAAUCCCUAGUAAGUCAAAAUCCCUCCCAAUCCCCUUCAAUCCAUAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ240954.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||||||||||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104

0.0 Sequence 6949 from Patent EP2985353 NA coding protein psRNATarget
HI408824.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||||||||||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104

0.0 Sequence 6949 from Patent EP2074227 NA coding protein psRNATarget
JB169285.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||||||||||||||||||||
targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104

0.0 Sequence 6949 from Patent EP2559767 NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:1969   UCAAUCCCCCUCAAUCCAUAUGGA   1992

1.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:606   UCAAUCCCCCUCAAUCCAUAUGGA   629

1.0 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:849   UCAAUCCCCCUCAAUCCAUAUGGA   872

1.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
JB170278.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103

1.0 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
LQ241947.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103

1.0 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*||||||||||||||||
targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103

1.0 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
BT055069.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:976   UCAAUCCCCUUCAAUCCAUAUGGA   999

2.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT041454.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:1497   UCAAUCCCCUUCAAUCCAUAUGGA   1520

2.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:1497   UCAAUCCCCUUCAAUCCAUAUGGA   1520

2.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:1483   UCAAUCCCCUUCAAUCCAUAUGGA   1506

2.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:1465   UCAAUCCCCUUCAAUCCAUAUGGA   1488

2.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=||||||||||||||
targets:1421   UCAAUCCCCUUCAAUCCAUAUGGA   1444

2.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
EU962730.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*=|||||||||||||||
targets:1073   UCAAUCCCUCUCAAUCCAUAUGGA   1096

2.0 Zea mays clone 245054 mRNA sequence NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||=*|=||||||||||||||
targets:3120   UCAAUCUCCUUCAAUCCAUAUGGA   3143

3.0 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||=||||*|=||||||||||||||
targets:1698   UCGAUCCCCUUCAAUCCAUAUGGA   1721

2.0 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   AGUUAGGA-GGAGUUAGGUAUACCU   1
  ||==|=||-||||||||||||||||
targets:1547   UCGGUUCUACCUCAAUCCAUAUGGA   1571

3.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
EU972313.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||=||||*|||||||||||||||*
targets:30   UCGAUCCCCCUCAAUCCAUAUGGC   53

2.0 Zea mays clone 379548 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT035012.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||**||||||||||||||||
targets:1608   UCAAUCACCCUCAAUCCAUAUGGA   1631

2.0 Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds NA coding protein psRNATarget
NM_001138093.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  ||||||**||||||||||||||||
targets:1608   UCAAUCACCCUCAAUCCAUAUGGA   1631

2.0 Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA NA coding protein psRNATarget
BT068463.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:1209   UGAAUCCCCCUCAAUCCAUAUGGA   1232

1.0 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
EU972032.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:937   UGAAUCCCCCUCAAUCCAUAUGGA   960

1.0 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:937   UGAAUCCCCCUCAAUCCAUAUGGA   960

1.0 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
BT068594.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:907   UGAAUCCCCCUCAAUCCAUAUGGA   930

1.0 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:910   UGAAUCCCCCUCAAUCCAUAUGGA   933

1.0 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*|||||*||||||||||||||||
targets:370   UGAAUCCCCCUCAAUCCAUAUGGA   393

1.0 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
XM_020537815.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |=|||||*|||||||||*||||||
targets:2603   UUAAUCCCCCUCAAUCCCUAUGGA   2626

2.5 PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:898   UCAAUCCACUCCAAUCCAUAUGGA   921

3.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649521.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:869   UCAAUCCACUCCAAUCCAUAUGGA   892

3.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
BT055408.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:817   UCAAUCCACUCCAAUCCAUAUGGA   840

3.0 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
NM_001152975.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:817   UCAAUCCACUCCAAUCCAUAUGGA   840

3.0 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
LQ239083.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:11   UCAAUCCACUCCAAUCCAUAUGGA   34

3.0 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
JB167414.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:11   UCAAUCCACUCCAAUCCAUAUGGA   34

3.0 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
HI406953.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |||||||*|=*|||||||||||||
targets:11   UCAAUCCACUCCAAUCCAUAUGGA   34

3.0 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
JB167799.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |=|||||*|||||||||*||||||
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.5 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
HI407338.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |=|||||*|||||||||*||||||
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.5 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
LQ239468.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |=|||||*|||||||||*||||||
targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96

2.5 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
XM_020547439.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  *||||||*|||||||||*||||||
targets:3927   CCAAUCCCCCUCAAUCCCUAUGGA   3950

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
AY103719.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  *|||||||*|||||||||*|||||
targets:881   CCAAUCCUGCUCAAUCCACAUGGA   904

2.5 Zea mays PCO137008 mRNA sequence NA coding protein psRNATarget
JB166364.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  *|||||||*|||||||||*|||||
targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105

2.5 Sequence 4028 from Patent EP2559767 NA coding protein psRNATarget
HI405903.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  *|||||||*|||||||||*|||||
targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105

2.5 Sequence 4028 from Patent EP2074227 NA coding protein psRNATarget
LQ238033.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  *|||||||*|||||||||*|||||
targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105

2.5 Sequence 4028 from Patent EP2985353 NA coding protein psRNATarget
XM_008653299.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |==||||*|||||||||*||||||
targets:820   UUGAUCCCCCUCAAUCCCUAUGGA   843

2.5 PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670868.2
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*||*|=||||||||=||||||||
targets:2608   UGAAACUUCCUCAAUUCAUAUGGA   2631

2.5 PREDICTED: Zea mays elongation factor G-2, chloroplastic (LOC103646146), mRNA NA coding protein psRNATarget
EZ101759.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*||*||*||||||||||||||||
targets:93   UAAAACCCCCUCAAUCCAUAUGGA   116

1.0 TSA: Zea mays contig37415, mRNA sequence NA coding protein psRNATarget
HI406948.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*||*|=||||||||=||||||||
targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73

2.5 Sequence 5073 from Patent EP2074227 NA coding protein psRNATarget
LQ239078.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*||*|=||||||||=||||||||
targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73

2.5 Sequence 5073 from Patent EP2985353 NA coding protein psRNATarget
JB167409.1
ncRNA:24   AGUUAGGAGGAGUUAGGUAUACCU   1
  |*||*|=||||||||=||||||||
targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73

2.5 Sequence 5073 from Patent EP2559767 NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   AG-UUAGGAGGAGUUAGGUAUACCU   1
  ||-|||||**|||||||||||||||
targets:2084   UCUAAUCCCACUCAAUCCAUAUGGA   2108

2.0 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:24   AG-UUAGGAGGAGUUAGGUAUACCU   1
  ||-|||||**|||||||||||||||
targets:1367   UCUAAUCCCACUCAAUCCAUAUGGA   1391

2.0 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
BT034589.1
ncRNA:24   AG-UUAGGAGGAGUUAGGUAUACCU   1
  ||-||*|||*|||||||||||||||
targets:793   UCUAAACCUACUCAAUCCAUAUGGA   817

1.0 Zea mays full-length cDNA clone ZM_BFb0002A19 mRNA, complete cds NA coding protein psRNATarget
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