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BaseInfo

ncRNA ID	novel_zma_miR5349
Species	Zea mays
Class	miRNA
Genome position	Chr8:136834766-136834900 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR4237220;SRR4237221
Length	24
Mature sequence(if miRNA)	1 - UAUUGGGAAUAACCGAACAAGCCU - 24
Stem-loop(if miRNA)	--             GC       C           AG  A       ------------U        AUCCC   GCUUGUUCGGUUA  UCUCAAU CAUAUGGAUUG  UG GAUUGGA             GAGUUUGA     A   |||||||||||||  ||||||| |||||||||||  || |||||||             ||||||||   CGAACAAGCCAAU  AGGGUUA GUGUACCUAAC  AC CUAACCU             UUCAAACU     A UC             -A       U           CU  C       UUUUUUAUAUUUC        GAACA
Stem-loop sequence	GCUUGUUCGGUUAGCUCUCAAUCCAUAUGGAUUGAGUGAGAUUGGAUGAGUUUGAAUCCCAAACAAGUCAAACUUCUUUAUAUUUUUUUCCAAUCCCAUCCAAUCCAUGUGUAUUGGGAAUAACCGAACAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ100118.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:28   GGGCUUGUUCGGUUAUUCCCAAUA   51 Target Full Sequence	0.0	TSA: Zea mays contig35773, mRNA sequence	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:2   GGGCUUGUUCGGUUAUUCCCAAUA   25 Target Full Sequence	0.0	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:2   GGGCUUGUUCGGUUAUUCCCAAUA   25 Target Full Sequence	0.0	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:2   GGGCUUGUUCGGUUAUUCCCAAUA   25 Target Full Sequence	0.0	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
EU949641.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:367   GGGCUUGUUCGGUUAUUCCCAAUA   390 Target Full Sequence	0.0	Zea mays clone 438540 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:32   GGGCUUGUUCGGUUAUUCCCAAUA   55 Target Full Sequence	0.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU942557.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:480   GGGCUUGUUCGGUUAUUCCCAAUA   503 Target Full Sequence	0.0	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EU951101.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:624   GGGCUUGUUCGGUUAUUCCCAAUA   647 Target Full Sequence	0.0	Zea mays clone 687881 mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:159   GGGCUUGUUCGGUUAUUCCCAAUA   182 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:791   GGGCUUGUUCGGUUAUUCCCAAUA   814 Target Full Sequence	0.0	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1041   GGGCUUGUUCGGUUAUUCCCAAUA   1064 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1041   GGGCUUGUUCGGUUAUUCCCAAUA   1064 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:98   GGGCUUGUUCGGUUAUUCCCAAUA   121 Target Full Sequence	0.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1532   GGGCUUGUUCGGUUAUUCCCAAUA   1555 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1799   GGGCUUGUUCGGUUAUUCCCAAUA   1822 Target Full Sequence	0.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1865   GGGCUUGUUCGGUUAUUCCCAAUA   1888 Target Full Sequence	0.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:1942   GGGCUUGUUCGGUUAUUCCCAAUA   1965 Target Full Sequence	0.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:2713   GGGCUUGUUCGGUUAUUCCCAAUA   2736 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:2817   GGGCUUGUUCGGUUAUUCCCAAUA   2840 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674024.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:3800   GGGCUUGUUCGGUUAUUCCCAAUA   3823 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674023.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:3814   GGGCUUGUUCGGUUAUUCCCAAUA   3837 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674025.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:3932   GGGCUUGUUCGGUUAUUCCCAAUA   3955 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674021.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||||||| targets:3947   GGGCUUGUUCGGUUAUUCCCAAUA   3970 Target Full Sequence	0.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ107338.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||=|||| targets:86   GGGCUUGUUCGGUUAUUCCUAAUA   109 Target Full Sequence	1.5	TSA: Zea mays contig42996, mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||=|||||| targets:4   GGGCUUGUUCGGUUAUUUCCAAUA   27 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||||=|||| targets:89   GGGCUUGUUCGGUUAUUCCUAAUA   112 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||=|||||| targets:1037   GGGCUUGUUCGGUUAUUUCCAAUA   1060 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||=|||||| targets:1037   GGGCUUGUUCGGUUAUUUCCAAUA   1060 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||||||||||||||=|||||| targets:1328   GGGCUUGUUCGGUUAUUUCCAAUA   1351 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||=|||||||||||||||||||| targets:2125   GGGUUUGUUCGGUUAUUCCCAAUA   2148 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:10   AGGCCUUGUUCGGUUAUUCCCAAUA   34 Target Full Sequence	0.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:150   AGGCCUUGUUCGGUUAUUCCCAAUA   174 Target Full Sequence	0.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU962956.1	ncRNA:24   UCC-GAACAAGCCAAUAAGGGUUAU   1   |||-||||||||||||||||||||| targets:1287   AGGACUUGUUCGGUUAUUCCCAAUA   1311 Target Full Sequence	0.0	Zea mays clone 246872 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:928   AGGCCUUGUUCGGUUAUUCCCAAUA   952 Target Full Sequence	0.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
AY104167.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:1392   AGGCCUUGUUCGGUUAUUCCCAAUA   1416 Target Full Sequence	0.0	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAUA   1402 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:1378   AGGCCUUGUUCGGUUAUUCCCAAUA   1402 Target Full Sequence	0.0	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAUA   1466 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:1442   AGGCCUUGUUCGGUUAUUCCCAAUA   1466 Target Full Sequence	0.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:2412   AGGCCUUGUUCGGUUAUUCCCAAUA   2436 Target Full Sequence	0.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:3395   AGGCCUUGUUCGGUUAUUCCCAAUA   3419 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:3381   AGGCCUUGUUCGGUUAUUCCCAAUA   3405 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:3663   AGGCCUUGUUCGGUUAUUCCCAAUA   3687 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:3668   AGGCCUUGUUCGGUUAUUCCCAAUA   3692 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UC-CGAACAAGCCAAUAAGGGUUAU   1   ||-|||||||||||||||||||||| targets:1141   AGAGCUUGUUCGGUUAUUCCCAAUA   1165 Target Full Sequence	0.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:7057   AGGCCUUGUUCGGUUAUUCCCAAUA   7081 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:7161   AGGCCUUGUUCGGUUAUUCCCAAUA   7185 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||||| targets:7172   AGGCCUUGUUCGGUUAUUCCCAAUA   7196 Target Full Sequence	0.0	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||=|| targets:10   AGGCCUUGUUCGGUUAUUCCCAGUA   34 Target Full Sequence	1.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||=|| targets:10   AGGCCUUGUUCGGUUAUUCCCAGUA   34 Target Full Sequence	1.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||||=|| targets:10   AGGCCUUGUUCGGUUAUUCCCAGUA   34 Target Full Sequence	1.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
EU967549.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||||=|||| targets:580   AGGCCUUGUUCGGUUAUUCCUAAUA   604 Target Full Sequence	1.5	Zea mays clone 304376 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||=|||||||||||||| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAUA   1751 Target Full Sequence	1.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||=|||||||||||||| targets:1727   AGGCCUUGUUUGGUUAUUCCCAAUA   1751 Target Full Sequence	1.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UCC-GAACAAGCCAAUAAGGGUUAU   1   |||-||||||=|||||||||||||| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAUA   1894 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UCC-GAACAAGCCAAUAAGGGUUAU   1   |||-||||||=|||||||||||||| targets:1870   AGGUCUUGUUUGGUUAUUCCCAAUA   1894 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||=|||||| targets:3306   AGGCCUUGUUCGGUUAUUUCCAAUA   3330 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||=|||||| targets:3319   AGGCCUUGUUCGGUUAUUUCCAAUA   3343 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-|||||||||||||=|||||| targets:3350   AGGCCUUGUUCGGUUAUUUCCAAUA   3374 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:7   GGGCUUGUUCGGUUAUUCCCAAAA   30 Target Full Sequence	1.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:2   GGGCUUGUUCGGUUAUUCCCAAAA   25 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:2   GGGCUUGUUCGGUUAUUCCCAAAA   25 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:2   GGGCUUGUUCGGUUAUUCCCAAAA   25 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:658   GGGCUUGUUCGGUUAUUCCCAAAA   681 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:787   GGGCUUGUUCGGUUAUUCCCAAAA   810 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:440   GGGCUUGUUCGGUUAUUCCCAAAA   463 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||*||||||||||||||||| targets:50   GGGCUUAUUCGGUUAUUCCCAAUA   73 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:994   GGGCUUGUUCGGUUAUUCCCAAAA   1017 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:1112   GGGCUUGUUCGGUUAUUCCCAAAA   1135 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =|||||||||||||||||||||*| targets:1112   GGGCUUGUUCGGUUAUUCCCAAAA   1135 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152598.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-||*||||||||||||||||| targets:1692   AGGCCUUAUUCGGUUAUUCCCAAUA   1716 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279601 (LOC100279601), mRNA	NA	coding protein	psRNATarget
BT054550.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-||*||||||||||||||||| targets:1692   AGGCCUUAUUCGGUUAUUCCCAAUA   1716 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0152O03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-||||||*||||||||||||| targets:5716   AGGCCUUGUUCAGUUAUUCCCAAUA   5740 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
BT040331.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   *|*||||||||||||||||=|||| targets:1711   UGCCUUGUUCGGUUAUUCCUAAUA   1734 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0083E04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157801.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   *|*||||||||||||||||=|||| targets:1748   UGCCUUGUUCGGUUAUUCCUAAUA   1771 Target Full Sequence	1.5	Zea mays Flavonoid 3-monooxygenase (LOC100273153), mRNA	NA	coding protein	psRNATarget
EZ101233.1	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   ||*||||||||||||||||||*|| targets:39   AGACUUGUUCGGUUAUUCCCAUUA   62 Target Full Sequence	1.5	TSA: Zea mays contig36889, mRNA sequence	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   |||*-||||||||||||||=||||| targets:860   AGGAAUUGUUCGGUUAUUCUCAAUA   884 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
XM_008658927.2	ncRNA:24   UCCG-AACAAGCCAAUAAGGGUUAU   1   ||||-||||*||||||||||||||= targets:213   AGGCCUUGUCCGGUUAUUCCCAAUG   237 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
BT069961.2	ncRNA:24   UCC-GAACAAGCCAAUAAGGGUUAU   1   |||-||||||=||||||||||*||| targets:22   AGGUCUUGUUUGGUUAUUCCCUAUA   46 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||*||||||||||||||||*| targets:1960   GGGCUCGUUCGGUUAUUCCCAAAA   1983 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   UCCGAACAAGCCAAUAAGGGUUAU   1   =||||*||||||||||||||||*| targets:2053   GGGCUCGUUCGGUUAUUCCCAAAA   2076 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405877.1	ncRNA:23   CCGAACAAGCCAAUAAGGGUUAU   1   |*|||*||||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAUA   23 Target Full Sequence	1.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:23   CCGAACAAGCCAAUAAGGGUUAU   1   |*|||*||||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAUA   23 Target Full Sequence	1.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:23   CCGAACAAGCCAAUAAGGGUUAU   1   |*|||*||||||||||||||||| targets:1   GCCUUAUUCGGUUAUUCCCAAUA   23 Target Full Sequence	1.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget