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BaseInfo

ncRNA ID	novel_zma_miR5346
Species	Zea mays
Class	miRNA
Genome position	Chr9:108996134-108996356 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	25
Mature sequence(if miRNA)	199 - AAUUGGUUUCCACUGGCGGUUUUUA - 223
Stem-loop(if miRNA)	--             A    UG                        A                                      AA  UAAGA                A   GAAACCGCCAGUG AAAU  AUUUCCACUGGCGGUUGUCUUAAC CAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUU  GU     UAACCGCCAGUGAAAA U   ||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||     |||||||||||||||| C   UUUUGGCGGUCAC UUUG  UAAAGGUGACCGCCAACAGAAUUG GUUGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAA  CA     GUUGGCGGUCACUUUU A AU             C    GU                        C                                      CA  UUGUG                A
Stem-loop sequence	GAAACCGCCAGUGAAAAUUGAUUUCCACUGGCGGUUGUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUAAGUUAAGAUAACCGCCAGUGAAAAAUCAAUUUUCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUGCGUUAAGACAACCGCCAGUGGAAAUUGGUUUCCACUGGCGGUUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940848.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:128   CUCAGGCUGCCAGUGGAAACCAAAU   152 Target Full Sequence	2.5	Zea mays clone 1163988 mRNA sequence	NA	coding protein	psRNATarget
NM_001174583.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:478   CUCAGGCUGCCAGUGGAAACCAAAU   502 Target Full Sequence	2.5	Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), mRNA	NA	coding protein	psRNATarget
BT062249.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:478   CUCAGGCUGCCAGUGGAAACCAAAU   502 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0232K08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549835.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:234   CUCAGGCUGCCAGUGGAAACCAAAU   258 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549832.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:625   CUCAGGCUGCCAGUGGAAACCAAAU   649 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549834.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:533   CUCAGGCUGCCAGUGGAAACCAAAU   557 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549833.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:569   CUCAGGCUGCCAGUGGAAACCAAAU   593 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549831.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:627   CUCAGGCUGCCAGUGGAAACCAAAU   651 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549829.1	ncRNA:25   AUUUUUGGCGGUCACCUUUGGUUAA   1   ***|==|=|||||||||||||||*| targets:627   CUCAGGCUGCCAGUGGAAACCAAAU   651 Target Full Sequence	2.5	PREDICTED: Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100381784), transcript variant X1, mRNA	NA	coding protein	psRNATarget