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BaseInfo

ncRNA ID	novel_zma_miR5345
Species	Zea mays
Class	miRNA
Genome position	Chr8:164894085-164894156 [-]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR4237222;SRR4237223;SRR4237224;SRR4237225;SRR4237226;SRR4237227;SRR5100248;SRR5105959;SRR5105961
Length	24
Mature sequence(if miRNA)	49 - AGGAUUGAAGGGGCUAGAAUACCC - 72
Stem-loop(if miRNA)	--A       A   -        A   -       CAA    GGAUUGA GGG GCUAGAAU CCC CACUAUU   U    ||||||| ||| |||||||| ||| |||||||    CCUAACU CCU CGAUCUUA GGG GUGAUAA   U UCC       -   A        -   A       AUU
Stem-loop sequence	AGGAUUGAAGGGGCUAGAAUACCCCACUAUUCAAUUUUAAAUAGUGAGGGAUUCUAGCAUCCUCAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238199.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:78   GGGUAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	0.0	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:78   GGGUAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	0.0	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:78   GGGUAUUCUAGCCCCUUCAAUCCU   101 Target Full Sequence	0.0	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:1031   GGGUAUUCUAGCCCCUUCAAUCCU   1054 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:864   GGGUAUUCUAGCCCCUUCAAUCCU   887 Target Full Sequence	0.0	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||||||||||||||||||||||| targets:864   GGGUAUUCUAGCCCCUUCAAUCCU   887 Target Full Sequence	0.0	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
EU974541.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1472   GGG-AUUUUAGCCCCUUCAAUCCC   1494 Target Full Sequence	2.0	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1571   GGG-AUUUUAGCCCCUUCAAUCCC   1593 Target Full Sequence	2.0	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1518   GGG-AUUUUAGCCCCUUCAAUCCC   1540 Target Full Sequence	2.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1611   GGG-AUUUUAGCCCCUUCAAUCCC   1633 Target Full Sequence	2.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1644   GGG-AUUUUAGCCCCUUCAAUCCC   1666 Target Full Sequence	2.0	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1664   GGG-AUUUUAGCCCCUUCAAUCCC   1686 Target Full Sequence	2.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1710   GGG-AUUUUAGCCCCUUCAAUCCC   1732 Target Full Sequence	2.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||-|||=|||||||||||||||* targets:1832   GGG-AUUUUAGCCCCUUCAAUCCC   1854 Target Full Sequence	2.0	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   |||*||||||||||||*||||||* targets:210   GGGGAUUCUAGCCCCUCCAAUCCA   233 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   CCCA----UAAGAUCGGGGAAGUUAGGA   1   *|||----|||=|||||||||||||||* targets:1101   CGGUGAGGAUUUUAGCCCCUUCAAUCCC   1128 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008676338.2	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   **|*|||=|||||||||||||=|| targets:1767   AAGAAUUUUAGCCCCUUCAAUUCU   1790 Target Full Sequence	2.5	PREDICTED: Zea mays probable inactive purple acid phosphatase 16 (LOC103650765), mRNA	NA	coding protein	psRNATarget
XM_008653722.2	ncRNA:24   CCC------AUAAGAUCGGGGAAGUUAGGA   1   |||------|||||*|||||*||||||||| targets:1444   GGGCCAAAAUAUUCGAGCCCAUUCAAUCCU   1473 Target Full Sequence	2.5	PREDICTED: Zea mays protein LEO1 homolog (LOC103631885), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152517.1	ncRNA:24   CCC------AUAAGAUCGGGGAAGUUAGGA   1   |||------|||||*|||||*||||||||| targets:1468   GGGCCAAAAUAUUCGAGCCCAUUCAAUCCU   1497 Target Full Sequence	2.5	Zea mays Protein LEO1-like protein (LOC100279518), mRNA	NA	coding protein	psRNATarget
BT054382.1	ncRNA:24   CCC------AUAAGAUCGGGGAAGUUAGGA   1   |||------|||||*|||||*||||||||| targets:1468   GGGCCAAAAUAUUCGAGCCCAUUCAAUCCU   1497 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653721.2	ncRNA:24   CCC------AUAAGAUCGGGGAAGUUAGGA   1   |||------|||||*|||||*||||||||| targets:1380   GGGCCAAAAUAUUCGAGCCCAUUCAAUCCU   1409 Target Full Sequence	2.5	PREDICTED: Zea mays protein LEO1 homolog (LOC103631885), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669567.2	ncRNA:24   CCC------AUAAGAUCGGGGAAGUUAGGA   1   |||------|||||*|||||*||||||||| targets:1519   GGGCCAAAAUAUUCGAGCCCAUUCAAUCCU   1548 Target Full Sequence	2.5	PREDICTED: Zea mays Protein LEO1-like protein (LOC100279518), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   CCCAUAAGAUCGGGGAAGUUAGGA   1   *||-|||*||||||||*||||||| targets:4120   AGG-AUUAUAGCCCCUCCAAUCCU   4142 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget