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BaseInfo

ncRNA ID	novel_zma_miR5344
Species	Zea mays
Class	miRNA
Genome position	Chr9:46706877-46706932 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	33 - GUUUAGAGGACGCUGCUGGAGAAC - 56
Stem-loop(if miRNA)	--AA                    UUAG     UCCAGCAGCGUUCUCUAAAU    A     ||||||||||||||||||||     AGGUCGUCGCAGGAGAUUUG    G CAAG                    CCAG
Stem-loop sequence	AAUCCAGCAGCGUUCUCUAAAUUUAGAGGACCGUUUAGAGGACGCUGCUGGAGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107270.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||||= targets:108   CGUCUCCAGCAGCGUCCUCUAAAU   131 Target Full Sequence	1.0	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||*|||||= targets:13   UGUCUCCAGCAGCGUCCCCUAAAU   36 Target Full Sequence	2.5	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||||= targets:585   CGUCUCCAGCAGCGUCCUCUAAAU   608 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||||= targets:652   CGUCUCCAGCAGCGUCCUCUAAAU   675 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||*|||||= targets:557   UGUCUCCAGCAGCGUCCCCUAAAU   580 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||||= targets:1783   UGUCUCCAGCAGCGUCCUCUAAAU   1806 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||||= targets:1882   UGUCUCCAGCAGCGUCCUCUAAAU   1905 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166333.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   |**||||||||||||||||||||| targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26 Target Full Sequence	0.0	Sequence 3997 from Patent EP2559767	NA	coding protein	psRNATarget
HI405872.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   |**||||||||||||||||||||| targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26 Target Full Sequence	0.0	Sequence 3997 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238002.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   |**||||||||||||||||||||| targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26 Target Full Sequence	0.0	Sequence 3997 from Patent EP2985353	NA	coding protein	psRNATarget
EU975903.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   |**||||||||||||||||||||| targets:658   GCCCUCCAGCAGCGUCCUCUAAAC   681 Target Full Sequence	0.0	Zea mays clone 504920 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553398.1	ncRNA:24   CAA--GAGGUCGUCGCAGGAGAUUUG   1   |||--||||||||||||||||||*|= targets:1513   GUUGUCUCCAGCAGCGUCCUCUAUAU   1538 Target Full Sequence	2.5	PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553398.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||||||*|= targets:1585   CCUCUCCAGCAGCGUCCUCUAUAU   1608 Target Full Sequence	2.5	PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   |*||||||||||||*||||||||= targets:3242   GCUCUCCAGCAGCGCCCUCUAAAU   3265 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   **|||||||||||||||*|||||= targets:2162   UCUCUCCAGCAGCGUCCCCUAAAU   2185 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238109.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4104 from Patent EP2985353	NA	coding protein	psRNATarget
JB166440.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4104 from Patent EP2559767	NA	coding protein	psRNATarget
HI405979.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4104 from Patent EP2074227	NA	coding protein	psRNATarget
JB166313.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31 Target Full Sequence	1.5	Sequence 3977 from Patent EP2559767	NA	coding protein	psRNATarget
HI405852.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31 Target Full Sequence	1.5	Sequence 3977 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237982.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31 Target Full Sequence	1.5	Sequence 3977 from Patent EP2985353	NA	coding protein	psRNATarget
HI405981.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4106 from Patent EP2074227	NA	coding protein	psRNATarget
JB166442.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4106 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238111.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30 Target Full Sequence	1.5	Sequence 4106 from Patent EP2985353	NA	coding protein	psRNATarget
EU945316.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ***||||||||*|||||||||||| targets:1313   CCCCUCCAGCAACGUCCUCUAAAC   1336 Target Full Sequence	1.5	Zea mays clone 257973 mRNA sequence	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ****|=|||||||||||||||||= targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29 Target Full Sequence	2.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ****|=|||||||||||||||||= targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29 Target Full Sequence	2.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ****|=|||||||||||||||||= targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29 Target Full Sequence	2.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
EZ099679.1	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ****||||||||=||||||||||= targets:100   AGAAUCCAGCAGUGUCCUCUAAAU   123 Target Full Sequence	2.5	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   CAAGAGGUCGUCGCAGGAGAUUUG   1   ****|||||=|||||||||||||= targets:3   AGAAUCCAGUAGCGUCCUCUAAAU   26 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget