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BaseInfo

ncRNA ID	novel_zma_miR5342
Species	Zea mays
Class	miRNA
Genome position	Chr9:12343795-12343925 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	20
Mature sequence(if miRNA)	1 - UAGAUCUAGAUCUAACGGAC - 20
Stem-loop(if miRNA)	--  A             C   C    GUAUAAUCAUGGUUUGUUA     UUUUUAUAAAUCUACACUAAGUGG   CC UUAGAUCUAGAUC AAC GUAU                   GAGUU                        U   || ||||||||||||| ||| ||||                   |||||   GG AAUCUAGAUCUAG UUG CAUA                   ACGAU                        G CA  C             A   U    -------------------     AUAAAUCGUAAAUUUAAGAGGGUG
Stem-loop sequence	CCAUUAGAUCUAGAUCCAACCGUAUGUAUAAUCAUGGUUUGUUAGAGUUUUUUUAUAAAUCUACACUAAGUGGUGGUGGGAGAAUUUAAAUGCUAAAUAUAGCAAUACUGUUAGAUCUAGAUCUAACGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551156.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   |||||||||||=|||||||| targets:748   GUCCGUUAGAUUUAGAUCUA   767 Target Full Sequence	1.5	PREDICTED: Zea mays SKP1-like protein 1B (LOC103652383), mRNA	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
HI402958.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
HI402958.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
JB163412.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget
JB163412.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget
JB163419.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
JB163419.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
HI402951.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   ||=|||||||||||||||*| targets:13   GUUCGUUAGAUCUAGAUCCA   32 Target Full Sequence	2.5	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
HI402951.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   **|*|||||||||||||||| targets:123   UACGGUUAGAUCUAGAUCUA   142 Target Full Sequence	2.0	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
JB170558.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   *|||||||||||||||||*| targets:55   AUCCGUUAGAUCUAGAUCCA   74 Target Full Sequence	1.5	Sequence 8222 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242227.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   *|||||||||||||||||*| targets:55   AUCCGUUAGAUCUAGAUCCA   74 Target Full Sequence	1.5	Sequence 8222 from Patent EP2985353	NA	coding protein	psRNATarget
HI410097.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   *|||||||||||||||||*| targets:55   AUCCGUUAGAUCUAGAUCCA   74 Target Full Sequence	1.5	Sequence 8222 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   *|||||||||||||||||*| targets:682   AUCCGUUAGAUCUAGAUCCA   701 Target Full Sequence	1.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956751.1	ncRNA:20   CAGGCAAUCUAGAUCUAGAU   1   *|||||||||||||||||*| targets:864   AUCCGUUAGAUCUAGAUCCA   883 Target Full Sequence	1.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget