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BaseInfo

ncRNA ID	novel_zma_miR5341
Species	Zea mays
Class	miRNA
Genome position	Chr8:178334299-178334381 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	21
Mature sequence(if miRNA)	63 - CGGAGAGGAUUAGAGGGACUA - 83
Stem-loop(if miRNA)	--C          AG    A       UU           A    GGAGAGGAUU  AGGG CUAAAAU  CUUUCUUAUUU A    ||||||||||  |||| |||||||  ||||||||||| A    CUUCUCCUAA  UCCC GAUUUUA  GAAAGAAUAAG U UGA          CU    C       GG           U
Stem-loop sequence	CGGAGAGGAUUAGAGGGACUAAAAUUUCUUUCUUAUUUAAAUUGAAUAAGAAAGGGAUUUUAGCCCCUUCAAUCCUCUUCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY111680.1	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   ||||||||||||||||||=|| targets:87   UAGUCCCUCUAAUCCUCUUCG   107 Target Full Sequence	1.5	Zea mays CL11621_2 mRNA sequence	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |||||=||||||||||||||| targets:938   UAGUCUCUCUAAUCCUCUCCG   958 Target Full Sequence	1.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |||||=||||||||||||||| targets:938   UAGUCUCUCUAAUCCUCUCCG   958 Target Full Sequence	1.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |||*|||||||||||*||||| targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |||*|||||||||||*||||| targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |||*|||||||||||*||||| targets:202   UAGCCCCUCUAAUCCCCUCCG   222 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
EU947090.1	ncRNA:21   AUCAGGGAGAUUAGGAGAGGC   1   |**|=|||||||||||||||* targets:263   UCCUUCCUCUAAUCCUCUCCC   283 Target Full Sequence	3.0	Zea mays clone 326920 mRNA sequence	NA	coding protein	psRNATarget