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BaseInfo

ncRNA ID	novel_zma_miR5340
Species	Zea mays
Class	miRNA
Genome position	Chr9:21678831-21678987 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	134 - AAGGGCUUGUUCGGUUAGGGAUGG - 157
Stem-loop(if miRNA)	--A               --     U GA                                              AUACA    AGGGCUUGUUCGGUU  AGGGA G  UUGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAUUUAAAUUUGU     A    |||||||||||||||  ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||     A    UUCCGAAUAAGCCAA  UUCCU C  AACUCCCCCUAACCUCCCUUAAUUUAGGGGAGGAUAAAUUUAAACA     U GAA               AC     - -A                                              AAAUU
Stem-loop sequence	AAGGGCUUGUUCGGUUAGGGAUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAUUUAAAUUUGUAUACAAAUUUAAAACAAAUUUAAAUAGGAGGGGAUUUAAUUCCCUCCAAUCCCCCUCAAACUCCUUCAAACCGAAUAAGCCUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550140.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||||||||||||||||||||||| targets:3607   CCAUCCCUAACCGAACAAGCCCUU   3630 Target Full Sequence	0.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||||||||||||||||||||||| targets:3607   CCAUCCCUAACCGAACAAGCCCUU   3630 Target Full Sequence	0.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   ||||=*|||||||||||||||||| targets:1044   CCAUUACUAACCGAACAAGCCCUU   1067 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||*|||||||||||||||||||* targets:3294   CCACCCCUAACCGAACAAGCCCUC   3317 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT054119.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||*==|||||||||||||||||| targets:464   CCACUUCUAACCGAACAAGCCCUU   487 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||**||||||||||||||||||| targets:144   CCACACCUAACCGAACAAGCCCUU   167 Target Full Sequence	0.0	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||**||||||||||||||||||| targets:214   CCACACCUAACCGAACAAGCCCUU   237 Target Full Sequence	0.0	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||**||||||||||||||||||| targets:204   CCACACCUAACCGAACAAGCCCUU   227 Target Full Sequence	0.0	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||**||||||||||||||||||| targets:429   CCACGCCUAACCGAACAAGCCCUU   452 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||**||||||||||||||||||| targets:789   CCACGCCUAACCGAACAAGCCCUU   812 Target Full Sequence	0.0	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||*|||||||||||||||*|||| targets:3062   CCACCCCUAACCGAACAAGGCCUU   3085 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||*|||||||||||||||*|||| targets:3067   CCACCCCUAACCGAACAAGGCCUU   3090 Target Full Sequence	1.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||| targets:176   AUAUCAAUAACCGAACAAGCCCUU   199 Target Full Sequence	2.0	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||| targets:1274   AUAUCAAUAACCGAACAAGCCCUU   1297 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||| targets:1274   AUAUCAAUAACCGAACAAGCCCUU   1297 Target Full Sequence	2.0	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||| targets:2386   AUAUCAAUAACCGAACAAGCCCUU   2409 Target Full Sequence	2.0	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406890.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||* targets:129   AUAUCAAUAACCGAACAAGCCCUA   152 Target Full Sequence	3.0	Sequence 5015 from Patent EP2074227	NA	coding protein	psRNATarget
JB167351.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||* targets:129   AUAUCAAUAACCGAACAAGCCCUA   152 Target Full Sequence	3.0	Sequence 5015 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239020.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   *=|||**||||||||||||||||* targets:129   AUAUCAAUAACCGAACAAGCCCUA   152 Target Full Sequence	3.0	Sequence 5015 from Patent EP2985353	NA	coding protein	psRNATarget
BT067853.1	ncRNA:24   GGUAGGGAUUGGCUUGUUCGGGAA   1   |||*=||*||*||||||||||||| targets:2215   CCACUCCAAAACGAACAAGCCCUU   2238 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget