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BaseInfo

ncRNA ID	novel_zma_miR5338
Species	Zea mays
Class	miRNA
Genome position	Chr9:86455639-86455694 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	33 - GAUUGGAGUGGAUUGAGAGGGAAA - 56
Stem-loop(if miRNA)	--        UG         GG A UG   GAUUGGAG  GAUUGAGAG  A A  A   ||||||||  |||||||||  | |   CUAACUUC  CUAAUUCUC  U U  A AC        UA         UU A UC
Stem-loop sequence	GAUUGGAGUGGAUUGAGAGGGAAAUGAACUUAUUUCUCUUAAUCAUCUUCAAUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088155.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ||||=||||||||||*|||||||| targets:1461   UUUCUCUCUCAAUCCCCUCCAAUC   1484 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ||||=|*||||||||*|||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   **||||*=|||||||||||||||| targets:3909   AAUCCCCUUCAAUCCACUCCAAUC   3932 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406953.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:3   AAACCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	1.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
JB167414.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:3   AAACCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	1.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:3   AAACCCACUCAAUCCACUCCAAUC   26 Target Full Sequence	1.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:809   AAACCCACUCAAUCCACUCCAAUC   832 Target Full Sequence	1.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:809   AAACCCACUCAAUCCACUCCAAUC   832 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:861   AAACCCACUCAAUCCACUCCAAUC   884 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   ***|||*||||||||||||||||| targets:890   AAACCCACUCAAUCCACUCCAAUC   913 Target Full Sequence	1.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   **||||*||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   **||||*||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAAGGGAGAGUUAGGUGAGGUUAG   1   **||||*||||||||*|||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget