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BaseInfo

ncRNA ID	novel_zma_miR5335
Species	Zea mays
Class	miRNA
Genome position	Chr9:121278168-121278217 [-]
Reference genome	RefGen_v4
Source	SRR2287165;SRR5451006
Length	24
Mature sequence(if miRNA)	27 - ACCAGGCCGCGGACUGUCCGGCCC - 50
Stem-loop(if miRNA)	-AC    CC      U     -  C    CAGG  GCGGAC GUCCG GC C    ||||  |||||| ||||| || C    GUCC  CGCCUG CAGGC CG G CGU    -C      C     G  C
Stem-loop sequence	ACCAGGCCGCGGACUGUCCGGCCCCGCGCGCGGACCGUCCGCCCCUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||||||||| targets:854   GGGCCGGACGGUCCGCGGCCUGGU   877 Target Full Sequence	1.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||||||||| targets:927   GGGCCGGACGGUCCGCGGCCUGGU   950 Target Full Sequence	1.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CCCGGCCUGUCAGGCGCCGGACCA   1   |||||||||=|||||||*|||||| targets:720   GGGCCGGACGGUCCGCGACCUGGU   743 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CCCG-GCCUGUCAGGCGCCGGACCA   1   *|||-|||||=|||||||||||||* targets:1346   AGGCACGGACGGUCCGCGGCCUGGG   1370 Target Full Sequence	2.0	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CCCG-GCCUGUCAGGCGCCGGACCA   1   *|||-|||||=|||||||||||||* targets:1428   AGGCACGGACGGUCCGCGGCCUGGG   1452 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget