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BaseInfo

ncRNA ID	novel_zma_miR5331
Species	Zea mays
Class	miRNA
Genome position	Chr8:143237044-143237093 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	1 - UUUUUCGGGCACUCGGCAAAGAGC - 24
Stem-loop(if miRNA)	-     -  -              A  UUUUU CG GGCACUCGGCAAAG G  ||||| || |||||||||||||| C  AAAAA GU CCGUGAGCUGUUUC A C     C  A              U
Stem-loop sequence	UUUUUCGGGCACUCGGCAAAGAGCAUCUUUGUCGAGUGCCAUGCAAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543430.1	ncRNA:24   CGAGAAACGGCUCACGGGCUUU-UU   1   ||||||||||||||||||||||-|| targets:1176   GCUCUUUGCCGAGUGCCCGAAAUAA   1200 Target Full Sequence	3.0	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:24   CGAGAAACGGCUCACGGGCUUUUU   1   *=|||||||||||||||||||||| targets:144   CUUCUUUGCCGAGUGCCCGAAAAA   167 Target Full Sequence	0.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   CGAGAAACGGCUCACGGGCUUUUU   1   *=|||||||||||||||||||||| targets:144   CUUCUUUGCCGAGUGCCCGAAAAA   167 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CGAGAAACGGCUCACGGGCUUUUU   1   *=|||||||||||||||||||||| targets:2163   CUUCUUUGCCGAGUGCCCGAAAAA   2186 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CGAGAAACGGCUCACGGGCUUUUU   1   *=|||||||||||||||||||||| targets:2163   CUUCUUUGCCGAGUGCCCGAAAAA   2186 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   CGAGAAACGGCUCACGGGCU-UUUU   1   *=||||||||||||||||||-|||| targets:15   CUUCUUUGCCGAGUGCCCGACAAAA   39 Target Full Sequence	3.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:24   CGAGAAACGGCUCACGGGCU-UUUU   1   |**|||||||||||||||||-|||| targets:252   GGACUUUGCCGAGUGCCCGACAAAA   276 Target Full Sequence	3.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget
XM_008657421.2	ncRNA:24   CGA-GAAACGGCUCACGGGCUUUUU   1   |||-|*|||||||*||||||||||| targets:132   GCUUCGUUGCCGAAUGCCCGAAAAA   156 Target Full Sequence	1.5	PREDICTED: Zea mays GDSL esterase/lipase At1g28590 (LOC103634831), mRNA	NA	coding protein	psRNATarget