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BaseInfo

ncRNA ID novel_zma_miR5329
Species Zea mays
Class miRNA
Genome position Chr8:146680205-146680278 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - UUGAGUGGGAUUGAGUGGGUUUAA - 24
Stem-loop(if miRNA) --   AG          -U         UCUCAAGUA
  UUG  UGGGAUUGAG  GGGUUUAAA         A
  |||  ||||||||||  |||||||||         G
  AAC  ACUCUAACUU  UUUAAAUUU         U
CU   CU          UU         UCUUGAAAU
Stem-loop sequence UUGAGUGGGAUUGAGUGGGUUUAAAUCUCAAGUAAGUUAAAGUUCUUUUAAAUUUUUUUCAAUCUCAUCCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061560.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||=|||||||||=|||||||
targets:1436   UUAAACUCACUCAAUCUCACUCAA   1459

2.5 Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds NA coding protein psRNATarget
NM_001174368.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||=|||||||||=|||||||
targets:1436   UUAAACUCACUCAAUCUCACUCAA   1459

2.5 Zea mays hypothetical protein (LOC100381539), mRNA NA coding protein psRNATarget
EZ064093.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||||||*|||||||||||||
targets:181   UUAAACCCACCCAAUCCCACUCAA   204

1.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
XM_008675817.2
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  |||||=|*||||||||||||||||
targets:4050   UUAAAUCGACUCAAUCCCACUCAA   4073

2.0 PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA NA coding protein psRNATarget
HI409007.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||=|||*|||||||||||||
targets:66   UUAAACUCACCCAAUCCCACUCAA   89

2.0 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||=|||*|||||||||||||
targets:66   UUAAACUCACCCAAUCCCACUCAA   89

2.0 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
JB169468.1
ncRNA:24   AAUUUGGGUGAGUUAGGGUGAGUU   1
  ||||||=|||*|||||||||||||
targets:66   UUAAACUCACCCAAUCCCACUCAA   89

2.0 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
BT066987.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:1407   UUCAAACUCAUUCAAUCCCACUCAA   1431

2.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
BT041052.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:1116   UUCAAACUCAUUCAAUCCCACUCAA   1140

2.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:1116   UUCAAACUCAUUCAAUCCCACUCAA   1140

2.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
EU942673.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:83   UUCAAACUCAUUCAAUCCCACUCAA   107

2.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:90   UUCAAACUCAUUCAAUCCCACUCAA   114

2.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:90   UUCAAACUCAUUCAAUCCCACUCAA   114

2.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=||||||||||||||
targets:90   UUCAAACUCAUUCAAUCCCACUCAA   114

2.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:5796   UUCAAACCCAUCCAAUCCCACUCAA   5820

2.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1221   UUCAAACCCAUCCAAUCCCACUCAA   1245

2.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1191   UUCAAACCCAUCCAAUCCCACUCAA   1215

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1191   UUCAAACCCAUCCAAUCCCACUCAA   1215

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1073   UUCAAACCCAUCCAAUCCCACUCAA   1097

2.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1950   UUCAAACCCAUCCAAUCCCACUCAA   1974

2.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1950   UUCAAACCCAUCCAAUCCCACUCAA   1974

2.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:2492   UUCAAACCCAUCCAAUCCCACUCAA   2516

2.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1807   UUCAAACCCAUCCAAUCCCACUCAA   1831

2.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1807   UUCAAACCCAUCCAAUCCCACUCAA   1831

2.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1522   UUCAAACCCAUCCAAUCCCACUCAA   1546

2.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1522   UUCAAACCCAUCCAAUCCCACUCAA   1546

2.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1458   UUCAAACCCAUCCAAUCCCACUCAA   1482

2.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:1458   UUCAAACCCAUCCAAUCCCACUCAA   1482

2.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:520   UUCAAACCCAUCCAAUCCCACUCAA   544

2.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT085319.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:168   UUCAAACCCAUCCAAUCCCACUCAA   192

2.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:866   UUCAAACCCAUCCAAUCCCACUCAA   890

2.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
EU951448.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:737   UUCAAACCCAUCCAAUCCCACUCAA   761

2.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:90   UUCAAACCCAUCCAAUCCCACUCAA   114

2.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:81   UUCAAACCCAUCCAAUCCCACUCAA   105

2.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:81   UUCAAACCCAUCCAAUCCCACUCAA   105

2.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:81   UUCAAACCCAUCCAAUCCCACUCAA   105

2.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCAA   95

2.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
JB166350.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCAA   95

2.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||||=*|||||||||||||
targets:71   UUCAAACCCAUCCAAUCCCACUCAA   95

2.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=*|||||||||||||
targets:2203   UUCAAACUCAUCCAAUCCCACUCAA   2227

3.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=*|||||||||||||
targets:112   UUCAAACUCAUCCAAUCCCACUCAA   136

3.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
JB166363.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=*|||||||||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCAA   96

3.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=*|||||||||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCAA   96

3.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||=||=*|||||||||||||
targets:72   UUCAAACUCAUCCAAUCCCACUCAA   96

3.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||||*|||||||||*|||||
targets:1958   UUGAAACCCCCUCAAUCCCCCUCAA   1982

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU962730.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||||*|||||||||*|||||
targets:1062   UUGAAACCCCCUCAAUCCCUCUCAA   1086

2.5 Zea mays clone 245054 mRNA sequence NA coding protein psRNATarget
BT069961.2
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-||||*||=*|||||||||||||
targets:102   UUCAAACACAUCCAAUCCCACUCAA   126

3.0 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||*|=*|||||||||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCAA   114

3.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||*|=*|||||||||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCAA   114

3.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AA-UUUGGGUGAGUUAGGGUGAGUU   1
  ||-|||||*|=*|||||||||||||
targets:90   UUCAAACCAAUCCAAUCCCACUCAA   114

3.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
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