Search result

BaseInfo

ncRNA ID	novel_zma_miR5318
Species	Zea mays
Class	miRNA
Genome position	Chr8:21634407-21634522 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	93 - GUUCGUUUGUGCUGGAUUGAUGGG - 116
Stem-loop(if miRNA)	--           C       AUGGG      -  -AUUC  AACCAGAUUGCUUAUCUA   GUUCGUUUGUG UGGAUUG     UCGGAA CG     CU                  A   ||||||||||| |||||||     |||||| ||     ||   CAAGCAAACAC GCCUAAU     GGCCUU GC     CG                  U AA           A       --GUA      A  AAUUU  AUUAGUUUCAAAUAUAUU
Stem-loop sequence	GUUCGUUUGUGCUGGAUUGAUGGGUCGGAACGAUUCCUAACCAGAUUGCUUAUCUAAUUUAUAUAAACUUUGAUUAGCUUUAACGAUUCCGGAUGUAAUCCGACACAAACGAACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ516643.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   |||||||||||=|||||||||||| targets:232   CCCAUCAAUCCGGCACAAACGAAC   255 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   |||=|||||||=|||||||||||| targets:102   CCCGUCAAUCCGGCACAAACGAAC   125 Target Full Sequence	1.5	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
HI405935.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   |||=|||||||=|||||||||||| targets:102   CCCGUCAAUCCGGCACAAACGAAC   125 Target Full Sequence	1.5	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
JB166396.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   |||=|||||||=|||||||||||| targets:102   CCCGUCAAUCCGGCACAAACGAAC   125 Target Full Sequence	1.5	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:99   CCCACCAAUCCGGCACAAACGAAC   122 Target Full Sequence	1.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:99   CCCACCAAUCCGGCACAAACGAAC   122 Target Full Sequence	1.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:99   CCCACCAAUCCGGCACAAACGAAC   122 Target Full Sequence	1.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
HI405871.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:17   CCCACCAAUCCGGCACAAACGAAC   40 Target Full Sequence	1.5	Sequence 3996 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238001.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:17   CCCACCAAUCCGGCACAAACGAAC   40 Target Full Sequence	1.5	Sequence 3996 from Patent EP2985353	NA	coding protein	psRNATarget
JB166332.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:17   CCCACCAAUCCGGCACAAACGAAC   40 Target Full Sequence	1.5	Sequence 3996 from Patent EP2559767	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:211   CCCACCAAUCCGGCACAAACGAAC   234 Target Full Sequence	1.5	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
EU975407.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:566   CCCACCAAUCCGGCACAAACGAAC   589 Target Full Sequence	1.5	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:2768   CCCACCAAUCCGGCACAAACGAAC   2791 Target Full Sequence	1.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||||=|||||||||||| targets:4509   CCCACCAAUCCGGCACAAACGAAC   4532 Target Full Sequence	1.5	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167800.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*=|||||=|||||||||||| targets:124   CCCACUAAUCCGGCACAAACGAAC   147 Target Full Sequence	2.5	Sequence 5464 from Patent EP2559767	NA	coding protein	psRNATarget
HI407339.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*=|||||=|||||||||||| targets:124   CCCACUAAUCCGGCACAAACGAAC   147 Target Full Sequence	2.5	Sequence 5464 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239469.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*=|||||=|||||||||||| targets:124   CCCACUAAUCCGGCACAAACGAAC   147 Target Full Sequence	2.5	Sequence 5464 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008650936.2	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||||*||||=|=|||||||||||| targets:1788   CCCACCAAUUCGGCACAAACGAAC   1811 Target Full Sequence	2.5	PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA	NA	coding protein	psRNATarget
BT066445.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   =|||*||||||=|||||||||||| targets:949   UCCACCAAUCCGGCACAAACGAAC   972 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   =|||*||||||=|||||||||||| targets:949   UCCACCAAUCCGGCACAAACGAAC   972 Target Full Sequence	1.5	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget
EU974791.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ||*|*||||||=|||||||||||| targets:567   CCAACCAAUCCGGCACAAACGAAC   590 Target Full Sequence	1.5	Zea mays clone 458239 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ***|*||||||=|||||||||||| targets:1312   AGAAGCAAUCCGGCACAAACGAAC   1335 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
BT035367.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ***|*||||||=|||||||||||| targets:1312   AGAAGCAAUCCGGCACAAACGAAC   1335 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
EU972216.1	ncRNA:24   GGGUAGUUAGGUCGUGUUUGCUUG   1   ***|*||||||=|||||||||||| targets:1330   AGAAGCAAUCCGGCACAAACGAAC   1353 Target Full Sequence	1.5	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget