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BaseInfo

ncRNA ID	novel_zma_miR5315
Species	Zea mays
Class	miRNA
Genome position	Chr8:80750539-80750597 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	36 - AGUUUUCGGAGCAGUAAAAGAGGU - 59
Stem-loop(if miRNA)	--            A   AA G    ACU   AGUUUUCGGAGC GUA  A AGGU   C   |||||||||||| |||  | ||||   C   UCAAAAGUCUCG CAU  U UUUA   A AG            G   AA G    AAA
Stem-loop sequence	AGUUUUCGGAGCAGUAAAAGAGGUACUCCAAAAAUUUGUAAUACGGCUCUGAAAACUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084823.2	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   |||||||||=||||||=||||||| targets:424   ACCUCUUUUGCUGCUCUGAAAACU   447 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0187L14 mRNA, complete cds	NA	coding protein	psRNATarget
EU957509.1	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   |||||||||=||||||=||||||| targets:1925   ACCUCUUUUGCUGCUCUGAAAACU   1948 Target Full Sequence	2.5	Zea mays clone 1595820 mRNA sequence	NA	coding protein	psRNATarget
XM_008670341.2	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   ||=||||||=||||||=||||||| targets:1787   ACUUCUUUUGCUGCUCUGAAAACU   1810 Target Full Sequence	2.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT087750.1	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   ||=||||||=||||||=||||||| targets:1868   ACUUCUUUUGCUGCUCUGAAAACU   1891 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0184L03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196790.1	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   ||=||||||=||||||=||||||| targets:1868   ACUUCUUUUGCUGCUCUGAAAACU   1891 Target Full Sequence	2.5	Zea mays bromodomain 4 (LOC100502312), mRNA	NA	coding protein	psRNATarget
XM_008670340.2	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   ||=||||||=||||||=||||||| targets:1837   ACUUCUUUUGCUGCUCUGAAAACU   1860 Target Full Sequence	2.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670339.2	ncRNA:24   UGGAGAAAAUGACGAGGCUUUUGA   1   ||=||||||=||||||=||||||| targets:1912   ACUUCUUUUGCUGCUCUGAAAACU   1935 Target Full Sequence	2.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X1, mRNA	NA	coding protein	psRNATarget