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BaseInfo

ncRNA ID	novel_zma_miR5310
Species	Zea mays
Class	miRNA
Genome position	Chr8:125237060-125237145 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	63 - AAUCUAUAUGGAUUGGAGGAGAUU - 86
Stem-loop(if miRNA)	--               G     -     UA  AAUUAAGAUAA   AAUCUAUAUGGAUUG AGGAG AUUGA  UA           A   ||||||||||||||| ||||| |||||  ||           U   UUAGGUAUAUCUAAC UCCUC UAACU  AC           U AG               -     C     -C  UCAAAGUUAGU
Stem-loop sequence	AAUCUAUAUGGAUUGGAGGAGAUUGAUAUAAAUUAAGAUAAAUUUGAUUGAAACUCACUCAAUCCUCCUCAAUCUAUAUGGAUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU953075.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   |||||||||||||||||||=|||| targets:1010   AAUCUCCUCCAAUCCAUAUGGAUU   1033 Target Full Sequence	1.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||||||=||||||||||=|||| targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   |||||||||||||||||||=|||* targets:337   AAUCUCCUCCAAUCCAUAUGGAUG   360 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||||||| targets:890   AAUCACCUCCAAUCCAUAUAGAUU   913 Target Full Sequence	0.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||||||| targets:890   AAUCACCUCCAAUCCAUAUAGAUU   913 Target Full Sequence	0.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EZ084135.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||||*||||||||||||||||| targets:34   AAUCUCAUCCAAUCCAUAUAGAUU   57 Target Full Sequence	1.0	TSA: Zea mays contig19779, mRNA sequence	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||||*|=||||||||||||||| targets:1201   AAUCUCAUUCAAUCCAUAUAGAUU   1224 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||||*|=||||||||||||||| targets:949   AAUCUCAUUCAAUCCAUAUAGAUU   972 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:303   AAUCCCCUCCAAUCCAUAUGGAUU   326 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:1632   AAUCCCCUCCAAUCCAUAUGGAUU   1655 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:24   AAUCCCCUCCAAUCCAUAUGGAUU   47 Target Full Sequence	1.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:1200   AAUCCCCUCCAAUCCAUAUGGAUU   1223 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||||=||||||||=|||| targets:1087   AAUCCCCUCCGAUCCAUAUGGAUU   1110 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:1162   AAUCCCCUCCAAUCCAUAUGGAUU   1185 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||||=||||||||=|||| targets:1049   AAUCCCCUCCGAUCCAUAUGGAUU   1072 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:919   AAUCCCCUCCAAUCCAUAUGGAUU   942 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:847   AAUCCCCUCCAAUCCAUAUGGAUU   870 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869 Target Full Sequence	1.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:848   AAUCCCCUCCAAUCCAUAUGGAUU   871 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:900   AAUCCCCUCCAAUCCAUAUGGAUU   923 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:701   AAUCCCCUCCAAUCCAUAUGGAUU   724 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*||||||||||||||=|||| targets:447   AAUCCCCUCCAAUCCAUAUGGAUU   470 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT055765.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|=||||||||||||=|||| targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153131.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|=||||||||||||=|||| targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA	NA	coding protein	psRNATarget
BT024027.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|=||||||||||||=|||| targets:1645   AAUCCCUUCCAAUCCAUAUGGAUU   1668 Target Full Sequence	2.5	Zea mays clone EL01N0420G12 mRNA sequence	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|||=||||||||||=|||| targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*|=||||||||||||=|||| targets:838   AAUCCCUUCCAAUCCAUAUGGAUU   861 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   =|||*|||=||||||||||=|||| targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   |||*||*||||||||||||=|||| targets:6363   AAUAUCAUCCAAUCCAUAUGGAUU   6386 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   |||*||*||||||||||||=|||| targets:5948   AAUAUCAUCCAAUCCAUAUGGAUU   5971 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   |||*||*||||||||||||=|||| targets:5886   AAUAUCAUCCAAUCCAUAUGGAUU   5909 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   ||||*=|||||||||||||*|||| targets:1361   AAUCCUCUCCAAUCCAUAUCGAUU   1384 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549432.1	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   =*|||*=|=||||||||||||||| targets:1942   GUUCUAUUUCAAUCCAUAUAGAUU   1965 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008673800.2	ncRNA:24   UUAGAGGAGGUUAGGUAUAUCUAA   1   =*|||*=|=||||||||||||||| targets:1653   GUUCUAUUUCAAUCCAUAUAGAUU   1676 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X1, mRNA	NA	coding protein	psRNATarget