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BaseInfo

ncRNA ID	novel_zma_miR5308
Species	Zea mays
Class	miRNA
Genome position	Chr1:299059603-299059677 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	22
Mature sequence(if miRNA)	54 - GGGGAUUGGAGAGGCUAAAAUC - 75
Stem-loop(if miRNA)	--    A        GC         A   UCAU   A   GGGG UUGGAGAG  UAAAAUCUC UCC    UCA U   |||| ||||||||  ||||||||| |||    |||   CCCC AACCUCUC  AUUUUAGGG AGG    AGU U UU    A        -A         G   UAUC   U
Stem-loop sequence	GGGGAUUGGAGAGGCUAAAAUCUCAUCCUCAUUCAAUUUUGACUAUGGAGGGGAUUUUAACUCUCCAAACCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651246.2	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ||||||||||||||=||||||* targets:2336   GAUUUUAGCCUCUCUAAUCCCA   2357 Target Full Sequence	2.5	PREDICTED: Zea mays phosphoribosylaminoimidazole carboxylase, chloroplastic (LOC103630165), mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||*|||||||||||||||| targets:162   GAUUUAAGCCUCUCCAAUCCCC   183 Target Full Sequence	1.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ||||||||||*||||||||||| targets:3495   GAUUUUAGCCCCUCCAAUCCCC   3516 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ||||||||||*||||||||||| targets:3530   GAUUUUAGCCCCUCCAAUCCCC   3551 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY104284.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ||*||||||||||||=|||||| targets:999   GAAUUUAGCCUCUCCGAUCCCC   1020 Target Full Sequence	1.5	Zea mays PCO103339 mRNA sequence	NA	coding protein	psRNATarget
EU943186.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ||||||||*||||||||||||* targets:1139   GAUUUUAGGCUCUCCAAUCCCA   1160 Target Full Sequence	2.0	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||||*||*||||||||||| targets:679   GAUUUUAUCCCCUCCAAUCCCC   700 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||||*||*||||||||||| targets:1559   GAUUUUAUCCCCUCCAAUCCCC   1580 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||||*||*||||||||||| targets:1579   GAUUUUAUCCCCUCCAAUCCCC   1600 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||||*||*||||||||||| targets:1603   GAUUUUAUCCCCUCCAAUCCCC   1624 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   |||||||*||*||||||||||| targets:1636   GAUUUUAUCCCCUCCAAUCCCC   1657 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:22   CUAAAAUCGGAGAGGUUAGGGG   1   ****||||||*||||||||||| targets:327   CUGCUUAGCCCCUCCAAUCCCC   348 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget