Search result

BaseInfo

ncRNA ID novel_zma_miR5300
Species Zea mays
Class miRNA
Genome position Chr7:111768252-111768322 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 48 - UGGUAAUCUGGAACGGAGCGGUUU - 71
Stem-loop(if miRNA) --        A    U    -     A       CG
  GCCGUUCC UUCC GAUU CUAGG ACGGAGC  C
  |||||||| |||| |||| ||||| |||||||
  UGGCGAGG AAGG CUAA GGUUU UGUCUUG  U
UU        C    U    U     G       UC
Stem-loop sequence GCCGUUCCAUUCCUGAUUCUAGGAACGGAGCCGCUCUGUUCUGUGUUUGGUAAUCUGGAACGGAGCGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542520.1
ncRNA:24   UUUGGCGAGGCAAGGUCUAAUGGU   1
  =|=|*|||||||||||||||||||
targets:1699   GAGCGGCUCCGUUCCAGAUUACCA   1722

0.0 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA NA coding protein psRNATarget