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BaseInfo

ncRNA ID	novel_zma_miR5297
Species	Zea mays
Class	miRNA
Genome position	Chr7:21578708-21578757 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - UAAAUUUAGAGAACGUUGCUGGAU - 24
Stem-loop(if miRNA)	--          C       --C  U   CCAGCAACGU CUCUAAA   GG C   |||||||||| |||||||   ||   GGUCGUUGCA GAGAUUU   UC C UA          A       AAA  U
Stem-loop sequence	CCAGCAACGUCCUCUAAACGGUCCUCUAAAUUUAGAGAACGUUGCUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008677400.2	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||=||||==|||||||||||||| targets:5274   AUCUAGCAGUGUUCUCUAAAUUUA   5297 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560-like (LOC103651695), mRNA	NA	coding protein	psRNATarget
XM_008667122.2	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||=||=|=||||||||||||||| targets:2622   AUCUAGUAGCGUUCUCUAAAUUUA   2645 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546911.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||=||=|=||||||||||||||| targets:2622   AUCUAGUAGCGUUCUCUAAAUUUA   2645 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ237984.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||||*||=||||||||||||||| targets:9   AUCCAUCAGCGUUCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3979 from Patent EP2985353	NA	coding protein	psRNATarget
JB166315.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||||*||=||||||||||||||| targets:9   AUCCAUCAGCGUUCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3979 from Patent EP2559767	NA	coding protein	psRNATarget
HI405854.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   |||||*||=||||||||||||||| targets:9   AUCCAUCAGCGUUCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3979 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008671521.2	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   *||=|||||||||||||||||||* targets:3937   CUCUAGCAACGUUCUCUAAAUUUC   3960 Target Full Sequence	1.0	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC103646897), mRNA	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   ||=|||||=|||*||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.5	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   ||=|||||=|||*||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.5	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   ||=|||||=|||*||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.5	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008683257.2	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   *|=|||||||||*||||||||||* targets:4149   UUUCAGCAACGUCCUCUAAAUUUC   4172 Target Full Sequence	2.5	PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174271.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   *||||*||||||||||||||||*| targets:1155   CUCCACCAACGUUCUCUAAAUUCA   1178 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381430 (LOC100381430), mRNA	NA	coding protein	psRNATarget
BT061237.1	ncRNA:24   UAGGUCGUUGCAAGAGAUUUAAAU   1   *||||*||||||||||||||||*| targets:1155   CUCCACCAACGUUCUCUAAAUUCA   1178 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0125H23 mRNA, complete cds	NA	coding protein	psRNATarget