Search result

BaseInfo

ncRNA ID novel_zma_miR5288
Species Zea mays
Class miRNA
Genome position Chr7:176670766-176670850 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - GGAAACGGGACGGAAACGAGAGAG - 24
Stem-loop(if miRNA) --A       -    A      U        GAUCCGAUUUU      A
   UCUCGUU CCGU CUGUUU CUAUAUUU           UUCCGU U
   ||||||| |||| |||||| ||||||||           ||||||
   AGAGCAA GGCA GGCAAA GGUAUAAA           AAGGCA U
GAG       A    G      -        -----------      U
Stem-loop sequence AUCUCGUUCCGUACUGUUUUCUAUAUUUGAUCCGAUUUUUUCCGUAUUUACGGAAAAAUAUGGAAACGGGACGGAAACGAGAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551219.1
ncRNA:24   GAGAGAG--CAAAGGCAGGGCAAAGG   1
  |||||||--|||||||||||||||||
targets:135   CUCUCUCCCGUUUCCGUCCCGUUUCC   160

2.5 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget