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BaseInfo

ncRNA ID	novel_zma_miR5279
Species	Zea mays
Class	miRNA
Genome position	Chr6:97560138-97560273 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - UAAGGGCAUGUUCGGUUACACUAA - 24
Stem-loop(if miRNA)	--UA     A                                  AU A         C   A     A     AGGGC UGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAG  G UUAAAUCCC UCC AGUCA A     ||||| ||||||||||||||||||||||||||||||||||  | ||||||||| ||| |||||     UCCCG ACAAGCCAAUGUGGUUAGGUUCUCCCCUAACUUC  C AAUUUAGGG AGG UCAGU A GAAA     A                                  CC A         A   A     A
Stem-loop sequence	UAAGGGCAUGUUCGGUUACACUAAUUUAGGAGGGGAUUGGAGAUGAUUAAAUCCCCUCCAAGUCAAAAAUGACUAGGAAGGGAUUUAAACCCCUUCAAUCCCCUCUUGGAUUGGUGUAACCGAACAAGCCCUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157439.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=||||||||||||||||||||| targets:551   UUGGUGUAACCGAACAUGCCCUUA   574 Target Full Sequence	0.0	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=||||||||||||||||||||| targets:551   UUGGUGUAACCGAACAUGCCCUUA   574 Target Full Sequence	0.0	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=||||||||||||||*|||||| targets:1131   UUGGUGUAACCGAACAUACCCUUA   1154 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=||||||||||||||*|||||| targets:1131   UUGGUGUAACCGAACAUACCCUUA   1154 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=|||||||||||||||||||** targets:23   UUGGUGUAACCGAACAUGCCCUGC   46 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   AAUCACAU--UGGCUUGUACGGGAAU   1   ||=|*|||--|||||||||||||||| targets:1632   UUGGGGUAGAACCGAACAUGCCCUUA   1657 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   AAUCACAU--UGGCUUGUACGGGAAU   1   ||=|*|||--|||||||||||||||| targets:1632   UUGGGGUAGAACCGAACAUGCCCUUA   1657 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   AA-UCACAUUGGCUUGUACGGGAAU   1   ||-||*|*||||||||||||||||| targets:209   UUGAGGGGAACCGAACAUGCCCUUA   233 Target Full Sequence	1.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AAUC--ACAUUGGCUUGUACGGGAAU   1   ||=|--|*||||||||||*||||||| targets:1993   UUGGGAUAUAACCGAACAAGCCCUUA   2018 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ||=*||*|||||||||*||||||| targets:1385   UUGAUGAAACCGAACAAGCCCUUA   1408 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget
EU962291.1	ncRNA:24   AA-UC-ACAUUGGCUUGUACGGGAAU   1   ||-||-||*|||||||||*||||||| targets:6   UUGAGAUGAAACCGAACAAGCCCUUA   31 Target Full Sequence	2.5	Zea mays clone 241544 mRNA sequence	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:24   AAUCACAUUGGCUUGUACGGGAAU   1   ****|**||||||||||||||||| targets:3169   CAUCUCAAACCGAACAUGCCCUUA   3192 Target Full Sequence	2.0	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget