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BaseInfo

ncRNA ID	novel_zma_miR5275
Species	Zea mays
Class	miRNA
Genome position	Chr6:42935566-42935631 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	43 - GCGCAAGGGCGGACUGUCUGCGGC - 66
Stem-loop(if miRNA)	----            GG   G    -   -    G     CGGACGGUCCGC  CCU GUGC GAG GCGC G     ||||||||||||  ||| |||| ||| ||||     GUCUGUCAGGCG  GGA CGCG CUC CGUG U CGGC            --   A    U   U    G
Stem-loop sequence	CGGACGGUCCGCGGCCUGGUGCGAGGCGCGGUGGUGCUCUCUGCGCAAGGGCGGACUGUCUGCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001196968.1	ncRNA:24   CGGCGUCUGUCAGGCGGGAACGCG   1   |||||=||||||||||||*||||| targets:1269   GCCGCGGACAGUCCGCCCCUGCGC   1292 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGGCGUCUGUCAGGCGGGAACGCG   1   |||||=||||||||||||*||||| targets:1269   GCCGCGGACAGUCCGCCCCUGCGC   1292 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGCGUCUGUCAGGCGGGAACGCG   1   |||||=||||||||||||*||||| targets:2712   GCCGCGGACAGUCCGCCCCUGCGC   2735 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget