Search result

BaseInfo

ncRNA ID	novel_zma_miR5272
Species	Zea mays
Class	miRNA
Genome position	Chr6:92503721-92503801 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	21
Mature sequence(if miRNA)	61 - AUACGAAUUGAUGGCCAUCUU - 81
Stem-loop(if miRNA)	--                                     U   AUACGAAUUGAUGGCCAUCUUCUUUAUAUGAAUAUAU U   ||||||||||||||||||||||||||||||||||||| C   UAUGCUUAACUACCGGUAGAAGAAAUAUACUUAUAUA U AC                                     U
Stem-loop sequence	AUACGAAUUGAUGGCCAUCUUCUUUAUAUGAAUAUAUUUCUUAUAUAUUCAUAUAAAGAAGAUGGCCAUCAAUUCGUAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008673403.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:683   AUGAAGGCCAUCAAAUCGUAU   703 Target Full Sequence	2.5	PREDICTED: Zea mays arginine decarboxylase-like (LOC103649054), mRNA	NA	coding protein	psRNATarget
XM_008665575.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:683   AUGAAGGCCAUCAAAUCGUAU   703 Target Full Sequence	2.5	PREDICTED: Zea mays arginine decarboxylase-like (LOC103642264), mRNA	NA	coding protein	psRNATarget
NM_001165500.2	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1235   AUGAAGGCCAUCAAAUCGUAU   1255 Target Full Sequence	2.5	Zea mays Arginine decarboxylase (LOC100275628), transcript variant 1, mRNA	NA	coding protein	psRNATarget
AY109103.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1248   AUGAAGGCCAUCAAAUCGUAU   1268 Target Full Sequence	2.5	Zea mays PCO076889 mRNA sequence	NA	coding protein	psRNATarget
EU957753.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1268   AUGAAGGCCAUCAAAUCGUAU   1288 Target Full Sequence	2.5	Zea mays clone 1614216 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671538.2	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1296   AUGAAGGCCAUCAAAUCGUAU   1316 Target Full Sequence	2.5	PREDICTED: Zea mays Arginine decarboxylase (LOC100275628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957236.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1273   AUGAAGGCCAUCAAAUCGUAU   1293 Target Full Sequence	2.5	Zea mays clone 1586604 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149675.1	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1273   AUGAAGGCCAUCAAAUCGUAU   1293 Target Full Sequence	2.5	Zea mays Arginine decarboxylase (LOC100275628), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_008671540.2	ncRNA:21   UUCUACCGGUAGUUAAGCAUA   1   |*||*|||||||||*|||||| targets:1300   AUGAAGGCCAUCAAAUCGUAU   1320 Target Full Sequence	2.5	PREDICTED: Zea mays Arginine decarboxylase (LOC100275628), transcript variant X2, mRNA	NA	coding protein	psRNATarget