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BaseInfo

ncRNA ID	novel_zma_miR5262
Species	Zea mays
Class	miRNA
Genome position	Chr5:121184012-121184124 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	21
Mature sequence(if miRNA)	93 - UCUGGAUUGGUGUAACUGAAU - 113
Stem-loop(if miRNA)	--          G     C      AA         A       C           A   UCGGUUAUAC AAUUC GAAGGG  UUAGAGGGG UUAAAUC CUUUCUAGUUA A   |||||||||| ||||| ||||||  ||||||||| ||||||| |||||||||||   AGUCAAUGUG UUAGG CUUCCC  AAUCUCCUU AAUUUAG GGAGGAUCAGU A UA          G     U      -C         A       U           A
Stem-loop sequence	UCGGUUAUACGAAUUCCGAAGGGAAUUAGAGGGGAUUAAAUCCCUUUCUAGUUAAAAAUGACUAGGAGGUGAUUUAAAUUCCUCUAACCCCUUCUGGAUUGGUGUAACUGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU971133.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:1489   GUUCGGUUACACCAAUCCAGA   1509 Target Full Sequence	1.0	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:1593   GUUCGGUUACACCAAUCCAGA   1613 Target Full Sequence	1.0	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
BT042688.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:1593   GUUCGGUUACACCAAUCCAGA   1613 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
BT060810.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:1492   GUUCGGUUACACCAAUCCAGA   1512 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:1273   GUUCGGUUACACCAAUCCAGA   1293 Target Full Sequence	1.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ095217.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||||||| targets:42   GUUCGGUUACACCAAUCCAGA   62 Target Full Sequence	1.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=||||||=||||||||| targets:450   GUUCGGUUACAUCAAUCCAGA   470 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=||||||=||||||||| targets:450   GUUCGGUUACAUCAAUCCAGA   470 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||=|||| targets:18   GUUCGGUUACACCAAUUCAGA   38 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||=|||| targets:18   GUUCGGUUACACCAAUUCAGA   38 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=|||||||||||=|||| targets:18   GUUCGGUUACACCAAUUCAGA   38 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
BT063242.2	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   *|||=||||=||||||||||| targets:480   CUUCGGUUAUACCAAUCCAGA   500 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0042E19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=||||||||||||||*| targets:26   GUUCGGUUACACCAAUCCAUA   46 Target Full Sequence	2.5	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=*||||||||||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.0	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=*||||||||||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.0	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=*||||||||||||||| targets:5   GUUCGUUUACACCAAUCCAGA   25 Target Full Sequence	2.0	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008673886.2	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=*||||||||||||||* targets:2375   GUUCGUUUACACCAAUCCAGC   2395 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193045 (LOC100193045), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ064120.1	ncRNA:21   UAAGUCAAUGUGGUUAGGUCU   1   =|||=*||||||||||||||* targets:93   GUUCGUUUACACCAAUCCAGC   113 Target Full Sequence	3.0	TSA: Zea mays contig65243, mRNA sequence	NA	coding protein	psRNATarget