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BaseInfo

ncRNA ID	novel_zma_miR5260
Species	Zea mays
Class	miRNA
Genome position	Chr5:95088603-95088697 [+]
Reference genome	RefGen_v4
Source	SRR2287165;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAUUCAUGUGGAUUGAGCGGGAUU - 24
Stem-loop(if miRNA)	--A   -          -  GC     UA UU     U   UCUCAAGC    AUU CAUGUGGAUU GA  GGGAU  G  AAGUU AAA        A    ||| |||||||||| ||  |||||  |  ||||| |||    UAA GUAUAUUUAA CU  CCCUA  U  UUUAA UUU        A GUA   U          U  -A     GC UU     U   UCUAACUA
Stem-loop sequence	AAUUCAUGUGGAUUGAGCGGGAUUAGUUAAGUUUAAAUCUCAAGCAAAUCAAUCUUUUUAAUUUUUUCGAUCCCAUCUAAUUUAUAUGUAAUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539703.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:65   AAUCCCGCUCAAUCCACAUGGAUU   88 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:2909   AAUCCCGCUCAAUCCACAUGGAUU   2932 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:2805   AAUCCCGCUCAAUCCACAUGGAUU   2828 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:2145   AAUCCCGCUCAAUCCACAUGGAUU   2168 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:2034   AAUCCCGCUCAAUCCACAUGGAUU   2057 Target Full Sequence	1.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:2052   AAUCCCGCUCAAUCCACAUGGAUU   2075 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:1957   AAUCCCGCUCAAUCCACAUGGAUU   1980 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:1891   AAUCCCGCUCAAUCCACAUGGAUU   1914 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:1624   AAUCCCGCUCAAUCCACAUGGAUU   1647 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:1133   AAUCCCGCUCAAUCCACAUGGAUU   1156 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||||||||||||||||=||| targets:1133   AAUCCCGCUCAAUCCACAUGGAUU   1156 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||||=||||||||||||||=||| targets:883   AAUCCUGCUCAAUCCACAUGGAUU   906 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||||=||||||||||||||=||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||||=||||||||||||||=||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||||=||||||||||||||=||| targets:84   AAUCCUGCUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*||||||||||||||||| targets:125   AAUCCCACUCAAUCCACAUGAAUU   148 Target Full Sequence	1.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:5809   AAUCCCACUCAAUCCACAUGGAUU   5832 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1234   AAUCCCACUCAAUCCACAUGGAUU   1257 Target Full Sequence	2.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1204   AAUCCCACUCAAUCCACAUGGAUU   1227 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1204   AAUCCCACUCAAUCCACAUGGAUU   1227 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1086   AAUCCCACUCAAUCCACAUGGAUU   1109 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1963   AAUCCCACUCAAUCCACAUGGAUU   1986 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1963   AAUCCCACUCAAUCCACAUGGAUU   1986 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:2505   AAUCCCACUCAAUCCACAUGGAUU   2528 Target Full Sequence	2.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:2216   AAUCCCACUCAAUCCACAUGGAUU   2239 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1820   AAUCCCACUCAAUCCACAUGGAUU   1843 Target Full Sequence	2.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1820   AAUCCCACUCAAUCCACAUGGAUU   1843 Target Full Sequence	2.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1535   AAUCCCACUCAAUCCACAUGGAUU   1558 Target Full Sequence	2.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1535   AAUCCCACUCAAUCCACAUGGAUU   1558 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1420   AAUCCCACUCAAUCCACAUGGAUU   1443 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:533   AAUCCCACUCAAUCCACAUGGAUU   556 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||=||||||| targets:466   AAUCCCUCUCAAUCCAUAUGAAUU   489 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1129   AAUCCCACUCAAUCCACAUGGAUU   1152 Target Full Sequence	2.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:1129   AAUCCCACUCAAUCCACAUGGAUU   1152 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:181   AAUCCCACUCAAUCCACAUGGAUU   204 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:879   AAUCCCACUCAAUCCACAUGGAUU   902 Target Full Sequence	2.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:750   AAUCCCACUCAAUCCACAUGGAUU   773 Target Full Sequence	2.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:96   AAUCCCACUCAAUCCACAUGGAUU   119 Target Full Sequence	2.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:103   AAUCCCACUCAAUCCACAUGGAUU   126 Target Full Sequence	2.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:94   AAUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	2.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:94   AAUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	2.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:94   AAUCCCACUCAAUCCACAUGGAUU   117 Target Full Sequence	2.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:85   AAUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	2.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:85   AAUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	2.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:85   AAUCCCACUCAAUCCACAUGGAUU   108 Target Full Sequence	2.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:84   AAUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:84   AAUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|||||||||||||=||| targets:84   AAUCCCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:3443   AAUCUCACUCAAUCCACAUGGAUU   3466 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |*|=||*|||||||||||||=||| targets:3517   AUUUCCUCUCAAUCCACAUGGAUU   3540 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:3412   AAUCUCACUCAAUCCACAUGGAUU   3435 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |*|=||*|||||||||||||=||| targets:3486   AUUUCCUCUCAAUCCACAUGGAUU   3509 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:3399   AAUCUCACUCAAUCCACAUGGAUU   3422 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |*|=||*|||||||||||||=||| targets:3473   AUUUCCUCUCAAUCCACAUGGAUU   3496 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2353   AAUCUCACUCAAUCCACAUGGAUU   2376 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2293   AAUCUCACUCAAUCCACAUGGAUU   2316 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2286   AAUCUCACUCAAUCCACAUGGAUU   2309 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2158   AAUCUCACUCAAUCCACAUGGAUU   2181 Target Full Sequence	2.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2157   AAUCUCACUCAAUCCACAUGGAUU   2180 Target Full Sequence	2.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:2085   AAUCUCACUCAAUCCACAUGGAUU   2108 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:1448   AAUCUCACUCAAUCCACAUGGAUU   1471 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:1448   AAUCUCACUCAAUCCACAUGGAUU   1471 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:251   AAUCUCACUCAAUCCACAUGGAUU   274 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:460   AAUCUCACUCAAUCCACAUGGAUU   483 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*=|||||||||||||||| targets:103   AAUCUCAUUCAAUCCACAUGAAUU   126 Target Full Sequence	2.0	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*=|||||||||||||||| targets:103   AAUCUCAUUCAAUCCACAUGAAUU   126 Target Full Sequence	2.0	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*=|||||||||||||||| targets:103   AAUCUCAUUCAAUCCACAUGAAUU   126 Target Full Sequence	2.0	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:96   AAUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:96   AAUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:96   AAUCUCACUCAAUCCACAUGGAUU   119 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:92   AAUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:92   AAUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:92   AAUCUCACUCAAUCCACAUGGAUU   115 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:84   AAUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:84   AAUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:84   AAUCUCACUCAAUCCACAUGGAUU   107 Target Full Sequence	2.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||=|*|||||||||||||=||| targets:21   AAUCUCACUCAAUCCACAUGGAUU   44 Target Full Sequence	2.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
EU952677.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||*||*|||||||||||||=||| targets:990   AAUACCACUCAAUCCACAUGGAUU   1013 Target Full Sequence	2.5	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT042439.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||*||*|||||||||||||=||| targets:968   AAUACCACUCAAUCCACAUGGAUU   991 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066125.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   |||*||*|||||||||||||=||| targets:1077   AAUACCACUCAAUCCACAUGGAUU   1100 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
HI409215.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|*=|||||||||||||| targets:79   AAUCCCACCUAAUCCACAUGAAUU   102 Target Full Sequence	3.0	Sequence 7340 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241345.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|*=|||||||||||||| targets:79   AAUCCCACCUAAUCCACAUGAAUU   102 Target Full Sequence	3.0	Sequence 7340 from Patent EP2985353	NA	coding protein	psRNATarget
JB169676.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   ||||||*|*=|||||||||||||| targets:79   AAUCCCACCUAAUCCACAUGAAUU   102 Target Full Sequence	3.0	Sequence 7340 from Patent EP2559767	NA	coding protein	psRNATarget
BT018765.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   *=|=|*||||||||||=||||||| targets:1171   UGUUCAGCUCAAUCCAUAUGAAUU   1194 Target Full Sequence	2.5	Zea mays clone EL01N0524E08.d mRNA sequence	NA	coding protein	psRNATarget
BT042079.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   *=|=|*||||||||||=||||||| targets:1150   UGUUCAGCUCAAUCCAUAUGAAUU   1173 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0126H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148335.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   *=|=|*||||||||||=||||||| targets:1150   UGUUCAGCUCAAUCCAUAUGAAUU   1173 Target Full Sequence	2.5	Zea mays Methyltransferase family protein (LOC100273944), mRNA	NA	coding protein	psRNATarget
EU967897.1	ncRNA:24   UUAGGGCGAGUUAGGUGUACUUAA   1   *=|=|*||||||||||=||||||| targets:1189   UGUUCAGCUCAAUCCAUAUGAAUU   1212 Target Full Sequence	2.5	Zea mays clone 306881 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget