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BaseInfo

ncRNA ID novel_zma_miR5258
Species Zea mays
Class miRNA
Genome position Chr5:51550184-51550233 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - GAGGUGGAUUGGGGUGUAAGUUAA - 24
Stem-loop(if miRNA) --             G         
  GAGGUGGAUUGGG UGUAAGUUAA
  ||||||||||||| |||||||||A
  CUCCACCUAACCC ACAUUUAAUC
AA             -         
Stem-loop sequence GAGGUGGAUUGGGGUGUAAGUUAAACUAAUUUACACCCAAUCCACCUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403066.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=|||||||||||||||||||
targets:54   UUAAUUUACACCCCAAUCCACCUC   77

0.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=|||||||||||||||||||
targets:54   UUAAUUUACACCCCAAUCCACCUC   77

0.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163527.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=|||||||||||||||||||
targets:54   UUAAUUUACACCCCAAUCCACCUC   77

0.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235208.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=||||=||=|||||||||||
targets:55   UUAAUUUACGCCUCAAUCCACCUC   78

2.5 Sequence 1203 from Patent EP2985353 NA coding protein psRNATarget
HI403078.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=||||=||=|||||||||||
targets:55   UUAAUUUACGCCUCAAUCCACCUC   78

2.5 Sequence 1203 from Patent EP2074227 NA coding protein psRNATarget
JB163539.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||=||||=||=|||||||||||
targets:55   UUAAUUUACGCCUCAAUCCACCUC   78

2.5 Sequence 1203 from Patent EP2559767 NA coding protein psRNATarget
HI403263.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163724.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
JB163723.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||=|||||||||||||
targets:55   CUAAUUUACAUCCCAAUCCACCUC   78

1.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
EZ106975.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=||||||||||||||||||=
targets:149   CUAAUUUACACCCCAAUCCACCUU   172

1.0 TSA: Zea mays contig42633, mRNA sequence NA coding protein psRNATarget
AY110566.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=||||||||||||||||||=
targets:288   CUAAUUUACACCCCAAUCCACCUU   311

1.0 Zea mays CL45690_1 mRNA sequence NA coding protein psRNATarget
JB163411.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||=||||||||||
targets:53   UUAAGUUACACCCUAAUCCACCUC   76

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||=||||||||||
targets:53   UUAAGUUACACCCUAAUCCACCUC   76

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||=||||||||||
targets:53   UUAAGUUACACCCUAAUCCACCUC   76

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
JB163781.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
LQ235491.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||||=
targets:55   UUAAGUUACACCCCAAUCCACCUU   78

1.0 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
HI403320.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
HI403321.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
HI403319.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||=||||||
targets:55   UUAAGUUACACCCCAAUUCACCUC   78

1.5 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163822.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||||=
targets:55   UUAAGUUACACCCCAAUCCACCUU   78

1.0 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
JB163780.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||=||||||
targets:55   UUAAGUUACACCCCAAUUCACCUC   78

1.5 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
JB163782.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
HI403361.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||||=
targets:55   UUAAGUUACACCCCAAUCCACCUU   78

1.0 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||=||||||||||
targets:46   UUAAGUUACACCCUAAUCCACCUC   69

1.5 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
LQ235451.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||=||
targets:55   UUAAGUUACACCCCAAUCCACUUC   78

1.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||=||||||
targets:55   UUAAGUUACACCCCAAUUCACCUC   78

1.5 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
EU949321.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||=||||||||||
targets:515   UUAAGUUACACCCUAAUCCACCUC   538

1.5 Zea mays clone 401072 mRNA sequence NA coding protein psRNATarget
JB163457.1
ncRNA:24   AAUU--GAAUGUGGGGUUAGGUGGAG   1
  ||||--=|||||||||||||||=|||
targets:49   UUAAACUUUACACCCCAAUCCAUCUC   74

1.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   AAUU--GAAUGUGGGGUUAGGUGGAG   1
  ||||--=|||||||||||||||=|||
targets:49   UUAAACUUUACACCCCAAUCCAUCUC   74

1.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
HI402996.1
ncRNA:24   AAUU--GAAUGUGGGGUUAGGUGGAG   1
  ||||--=|||||||||||||||=|||
targets:49   UUAAACUUUACACCCCAAUCCAUCUC   74

1.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
EU941642.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  |||=*|||||||=|||||||||||
targets:3   UUAGGUUACACCUCAAUCCACCUC   26

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
AY107149.2
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*|||||=||=||||||||||
targets:1291   UUAAGUUACAUCCUAAUCCACCUC   1314

2.5 Zea mays PCO139446 mRNA sequence NA coding protein psRNATarget
BT019068.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||=|||||||*|||||||||||
targets:217   CUAAUUUACACCACAAUCCACCUC   240

1.5 Zea mays clone Contig631.F mRNA sequence NA coding protein psRNATarget
LQ235205.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:54   UUAAGUUACACCCCAAUCCACAUC   77

1.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
HI403075.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:54   UUAAGUUACACCCCAAUCCACAUC   77

1.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
JB163536.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:54   UUAAGUUACACCCCAAUCCACAUC   77

1.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:55   UUAAGUUACACCCCAAUCCACAUC   78

1.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
JB163837.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:55   UUAAGUUACACCCCAAUCCACAUC   78

1.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403376.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  ||||*||||||||||||||||*||
targets:55   UUAAGUUACACCCCAAUCCACAUC   78

1.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||*|||=||||||||||=||||
targets:54   CUAAAUUAUACCCCAAUCCGCCUC   77

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
JB163478.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||*|||=||||||||||=||||
targets:54   CUAAAUUAUACCCCAAUCCGCCUC   77

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   AAUUGAAUGUGGGGUUAGGUGGAG   1
  *|||*|||=||||||||||=||||
targets:54   CUAAAUUAUACCCCAAUCCGCCUC   77

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
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