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BaseInfo

ncRNA ID	novel_zma_miR5251
Species	Zea mays
Class	miRNA
Genome position	Chr7:21213147-21213272 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR4237225;SRR5100248
Length	24
Mature sequence(if miRNA)	103 - UGAGGUAGUGAACCAAACAGGCCU - 126
Stem-loop(if miRNA)	--            UG     AAAUG                -------------        CG   G   GCUUGUUUGGUU  UUGCU     UGUCACACUUUGCCUA             AGGUUAGU  UUC A   ||||||||||||  |||||     ||||||||||||||||             ||||||||  ||| A   CGGACAAACCAA  GAUGG     ACGGUGUGAAACGGAU             UCCAAUCA  AAG U UC            GU     AGUCA                UGAAAAGACCAAU        AU   U
Stem-loop sequence	GCUUGUUUGGUUUGUUGCUAAAUGUGUCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAACCAGAAAAGUUAGGCAAAGUGUGGCAACUGAGGUAGUGAACCAAACAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU955574.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   =||||||||||||||||||||||| targets:110   GGGCCUGUUUGGUUCACUACCUCA   133 Target Full Sequence	0.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   =||||||||||||||||||||||| targets:110   GGGCCUGUUUGGUUCACUACCUCA   133 Target Full Sequence	0.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   *||||||||||||||||||||||| targets:1630   UGGCCUGUUUGGUUCACUACCUCA   1653 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   *||||||||||||||||||||||| targets:1700   UGGCCUGUUUGGUUCACUACCUCA   1723 Target Full Sequence	0.0	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   *||||||||||||||||||||||| targets:1700   UGGCCUGUUUGGUUCACUACCUCA   1723 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   =|||||||||||||||||=||||| targets:838   GGGCCUGUUUGGUUCACUGCCUCA   861 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   =|||||||||||||||||=||||| targets:1322   GGGCCUGUUUGGUUCACUGCCUCA   1345 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UCCGGACAAACCAAGUGAUGGAGU   1   |*||*|||||||||||||||||=| targets:1480   AAGCAUGUUUGGUUCACUACCUUA   1503 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget