Search result

BaseInfo

ncRNA ID	novel_zma_miR5240
Species	Zea mays
Class	miRNA
Genome position	Chr7:152372528-152372653 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	1 - AUGUAUUGAGAAUAACCGAACAAG - 24
Stem-loop(if miRNA)	--          GC       C   G       AG       --   -------U        AUCCC   UGUUCGGUUA  UCUCAAU CAU UGGAUUG  UGGGAUU  AGA        GAGUUUGA     A   ||||||||||  ||||||| ||| |||||||  |||||||  |||        ||||||||   ACAAGCCAAU  AGAGUUA GUA ACCUAAC  ACCCUAA  UCU        UUCAAACU     A GA          -A       U   A       CU       CC   UUUAAUUC        GAACA
Stem-loop sequence	UGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGGGAUUAGAUGAGUUUGAAUCCCAAACAAGUCAAACUUCUUAAUUUUCUCCAAUCCCAUCCAAUCCAAAUGUAUUGAGAAUAACCGAACAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667120.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   *||||||||||||||||||||||| targets:864   AUUGUUCGGUUAUUCUCAAUACAU   887 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
EU962956.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:1291   CUUGUUCGGUUAUUCCCAAUACAU   1314 Target Full Sequence	1.5	Zea mays clone 246872 mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:162   CUUGUUCGGUUAUUCCCAAUACAU   185 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
EU951101.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:627   CUUGUUCGGUUAUUCCCAAUACAU   650 Target Full Sequence	1.5	Zea mays clone 687881 mRNA sequence	NA	coding protein	psRNATarget
EU949641.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:370   CUUGUUCGGUUAUUCCCAAUACAU   393 Target Full Sequence	1.5	Zea mays clone 438540 mRNA sequence	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||| targets:14   CUUGUUCGGUUAUUCCCAAUACAU   37 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:7176   CUUGUUCGGUUAUUCCCAAUACAC   7199 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:7165   CUUGUUCGGUUAUUCCCAAUACAC   7188 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:7061   CUUGUUCGGUUAUUCCCAAUACAC   7084 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1145   CUUGUUCGGUUAUUCCCAAUACAC   1168 Target Full Sequence	2.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3672   CUUGUUCGGUUAUUCCCAAUACAC   3695 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3667   CUUGUUCGGUUAUUCCCAAUACAC   3690 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674021.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3950   CUUGUUCGGUUAUUCCCAAUACAC   3973 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674025.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3935   CUUGUUCGGUUAUUCCCAAUACAC   3958 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674023.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3817   CUUGUUCGGUUAUUCCCAAUACAC   3840 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674024.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3803   CUUGUUCGGUUAUUCCCAAUACAC   3826 Target Full Sequence	2.5	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100216669), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3385   CUUGUUCGGUUAUUCCCAAUACAC   3408 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:3399   CUUGUUCGGUUAUUCCCAAUACAC   3422 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:2820   CUUGUUCGGUUAUUCCCAAUACAC   2843 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:2716   CUUGUUCGGUUAUUCCCAAUACAC   2739 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:2416   CUUGUUCGGUUAUUCCCAAUACAC   2439 Target Full Sequence	2.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1945   CUUGUUCGGUUAUUCCCAAUACAC   1968 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1868   CUUGUUCGGUUAUUCCCAAUACAC   1891 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1802   CUUGUUCGGUUAUUCCCAAUACAC   1825 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1535   CUUGUUCGGUUAUUCCCAAUACAC   1558 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:101   CUUGUUCGGUUAUUCCCAAUACAC   124 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1446   CUUGUUCGGUUAUUCCCAAUACAC   1469 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1446   CUUGUUCGGUUAUUCCCAAUACAC   1469 Target Full Sequence	2.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1382   CUUGUUCGGUUAUUCCCAAUACAC   1405 Target Full Sequence	2.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1382   CUUGUUCGGUUAUUCCCAAUACAC   1405 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
AY104167.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1396   CUUGUUCGGUUAUUCCCAAUACAC   1419 Target Full Sequence	2.5	Zea mays PCO062696 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:932   CUUGUUCGGUUAUUCCCAAUACAC   955 Target Full Sequence	2.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1044   CUUGUUCGGUUAUUCCCAAUACAC   1067 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:1044   CUUGUUCGGUUAUUCCCAAUACAC   1067 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:794   CUUGUUCGGUUAUUCCCAAUACAC   817 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU942557.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:483   CUUGUUCGGUUAUUCCCAAUACAC   506 Target Full Sequence	2.5	Zea mays clone 1517970 mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:154   CUUGUUCGGUUAUUCCCAAUACAC   177 Target Full Sequence	2.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:35   CUUGUUCGGUUAUUCCCAAUACAC   58 Target Full Sequence	2.5	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:14   CUUGUUCGGUUAUUCCCAAUACAC   37 Target Full Sequence	2.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:5   CUUGUUCGGUUAUUCCCAAUACAC   28 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:5   CUUGUUCGGUUAUUCCCAAUACAC   28 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:5   CUUGUUCGGUUAUUCCCAAUACAC   28 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
EZ100118.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||||||||||||||*|||||||* targets:31   CUUGUUCGGUUAUUCCCAAUACAC   54 Target Full Sequence	2.5	TSA: Zea mays contig35773, mRNA sequence	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   =||||||||||||||*|||||||* targets:2128   UUUGUUCGGUUAUUCCCAAUACAC   2151 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:53   CUUAUUCGGUUAUUCCCAAUACAC   76 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
NM_001152598.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:1696   CUUAUUCGGUUAUUCCCAAUACAG   1719 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279601 (LOC100279601), mRNA	NA	coding protein	psRNATarget
BT054550.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:1696   CUUAUUCGGUUAUUCCCAAUACAG   1719 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0152O03 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:3   CUUAUUCGGUUAUUCCCAAUACAC   26 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:3   CUUAUUCGGUUAUUCCCAAUACAC   26 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   GAACAAGCCAAUAAGAGUUAUGUA   1   |||*|||||||||||*|||||||* targets:3   CUUAUUCGGUUAUUCCCAAUACAC   26 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget