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BaseInfo

ncRNA ID	novel_zma_miR5234
Species	Zea mays
Class	miRNA
Genome position	Chr5:197618187-197618338 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - CCAUUAAGGGCUUGUUCGGUUAUU - 24
Stem-loop(if miRNA)	--  -   A       G      --                A    G    AAUUUAU   UA UG  AGAGAUUUUGACUUA   CC AUU AGGGCUU UUCGGU  UAUUUCAAUCCAUAUG AUUG AGGG       GUG  U  GA               C   || ||| ||||||| ||||||  |||||||||||||||| |||| ||||       |||  |  ||               U   GG UGA UCUCGAA AAGCCA  AUGGAGUUAGGUAUAC UAAC UCCC       CUA  A  CU               A GU  A   A       -      AG                C    -    ------C   -- --  CUCCCAAAGUUAGAG
Stem-loop sequence	CCAUUAAGGGCUUGUUCGGUUAUUUCAAUCCAUAUGAAUUGGAGGGAAUUUAUGUGUAUUGGAAGAGAUUUUGACUUACUAGAGAUUGAAACCCUCUCAAUCCCCCUCAAUCCAUAUGGAUUGAGGUAGAACCGAAAAGCUCUAAGUAGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645434.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:2564   AAUAACCGAACAAGCCCUUAGUGG   2587 Target Full Sequence	1.5	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:2391   AAUAACCGAACAAGCCCUUAGUGG   2414 Target Full Sequence	1.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062563.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:1321   AAUAACCGAACAAGCCCUUAGUGG   1344 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:1321   AAUAACCGAACAAGCCCUUAGUGG   1344 Target Full Sequence	1.5	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:1279   AAUAACCGAACAAGCCCUUAGUGG   1302 Target Full Sequence	1.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:1279   AAUAACCGAACAAGCCCUUAGUGG   1302 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||=||| targets:181   AAUAACCGAACAAGCCCUUAGUGG   204 Target Full Sequence	1.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUU-ACC   1   |||||||||||||||||||||-||| targets:1005   AAUAACCGAACAAGCCCUUAACUGG   1029 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAU-UACC   1   ||||||||||||||||||||-|||| targets:2584   AAUAACCGAACAAGCCCUUAUAUGG   2608 Target Full Sequence	3.0	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUU-ACC   1   |||||||||||||||||||||-||| targets:813   AAUAACCGAACAAGCCCUUAAGUGG   837 Target Full Sequence	3.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||||*||| targets:2673   AAUAACCGAACAAGCCCUUACUGG   2696 Target Full Sequence	1.5	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   |||||||||||||||||||||*|| targets:3149   AAUAACCGAACAAGCCCUUAAAGG   3172 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:946   AAUAACCGAACAAGCCCUGAAUGG   969 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:874   AAUAACCGAACAAGCCCUGAAUGG   897 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:873   AAUAACCGAACAAGCCCUGAAUGG   896 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:873   AAUAACCGAACAAGCCCUGAAUGG   896 Target Full Sequence	1.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:875   AAUAACCGAACAAGCCCUGAAUGG   898 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   ||||||||||||||||||*||||| targets:927   AAUAACCGAACAAGCCCUGAAUGG   950 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAU-UACC   1   =*||||||||||||||||||-|||| targets:2937   GCUAACCGAACAAGCCCUUAGAUGG   2961 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAU-UACC   1   =*||||||||||||||||||-|||| targets:2833   GCUAACCGAACAAGCCCUUAGAUGG   2857 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   =*||||||||||||||*||||||| targets:131   GCUAACCGAACAAGCCAUUAAUGG   154 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   =*||||||||||||||*||||||| targets:131   GCUAACCGAACAAGCCAUUAAUGG   154 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   =*||||||||||||||*||||||| targets:131   GCUAACCGAACAAGCCAUUAAUGG   154 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   =*||||||||||||||||||||** targets:217   GCUAACCGAACAAGCCCUUAAUCU   240 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   **||||||||||||||||||||** targets:794   CCUAACCGAACAAGCCCUUAAUAU   817 Target Full Sequence	2.5	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   **||||||||||||||||||||** targets:434   CCUAACCGAACAAGCCCUUAAUAU   457 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   **||||||||||||||||||||** targets:209   CCUAACCGAACAAGCCCUUAAUAU   232 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   **||||||||||||||||||||** targets:219   CCUAACCGAACAAGCCCUUAAUAU   242 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   **||||||||||||||||||||** targets:149   CCUAACCGAACAAGCCCUUAAUAU   172 Target Full Sequence	2.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU945457.1	ncRNA:24   UUA-------UUGGCUUGUUCGGGAAUUACC   1   |||-------||||||||||||||||||*|| targets:278   AAUCCAUUGCAACCGAACAAGCCCUUAAGGG   308 Target Full Sequence	1.5	Zea mays clone 273811 mRNA sequence	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUAUUGGCUUGUUCGGGAAUUACC   1   *|*|||||||||||*||||||||| targets:636   UAGAACCGAACAAGGCCUUAAUGG   659 Target Full Sequence	1.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget