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BaseInfo

ncRNA ID	novel_zma_miR5230
Species	Zea mays
Class	miRNA
Genome position	Chr4:87478931-87479031 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	78 - AAAGUGUGGCAAGUUAGGUAGUAA - 101
Stem-loop(if miRNA)	--CA  G      G                -------------        - G  CG     UG CUAACU UGCCACACUUUGCCUA             AGGUUAGU C UC  A     || |||||| ||||||||||||||||             |||||||| | ||     AU GAUUGA ACGGUGUGAAACGGAU             UCCAAUCA G AG  A AAUG  G      -                UGAAAAGAAGGAU        A A  UU
Stem-loop sequence	CAUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUCCGAAUUGAAGAACUAACCUUAGGAAGAAAAGUUAGGCAAAGUGUGGCAAGUUAGGUAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||=|||||||||||||||||| targets:618   UUCACUGCCUAACUUGCCACACUUU   642 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||=|||||||||||||||||| targets:601   UUCACUGCCUAACUUGCCACACUUU   625 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||=|||||||||||||||||| targets:636   UUCACUGCCUAACUUGCCACACUUU   660 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||||||||||| targets:14   UUCGCUGCCUAACUUGCCACACUUU   38 Target Full Sequence	1.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||||||||||||=|||||||| targets:928   UUCGCUACCUAACUUGUCACACUUU   952 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||||||||||||=|||||||| targets:928   UUCGCUACCUAACUUGUCACACUUU   952 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=|||||||||||||||||| targets:927   UUGAUGCCUAACUUGCCACACUUU   950 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=|||||||||||||||||| targets:1415   UUGAUGCCUAACUUGCCACACUUU   1438 Target Full Sequence	1.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=|||||||||||||||||| targets:1425   UUGAUGCCUAACUUGCCACACUUU   1448 Target Full Sequence	1.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||*||=||||||||||||||=||| targets:689   UUCCUGCCUAACUUGCCACAUUUU   712 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||=|||||||| targets:14   UUCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||=|||||||| targets:14   UUCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|||||||||=|||||||| targets:14   UUCGCUGCCUAACUUGUCACACUUU   38 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|=|||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|=|||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-=||=|=|||||||||||||||| targets:14   UUCGCUGCUUAACUUGCCACACUUU   38 Target Full Sequence	2.0	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|==||||||||||||||||| targets:1480   UUGGUGUCUAACUUGCCACACUUU   1503 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|==||||||||||||||||| targets:3004   UUGAUGUCUAACUUGCCACACUUU   3027 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|==||||||||||||||||| targets:3132   UUGAUGUCUAACUUGCCACACUUU   3155 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|==||||||||||||||||| targets:3139   UUGAUGUCUAACUUGCCACACUUU   3162 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|*|=|||||||||||||||||| targets:1044   UUCAGUGCCUAACUUGCCACACUUU   1068 Target Full Sequence	1.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||*||=|||||*|||||||||||| targets:3   UUCCUGCCUAAGUUGCCACACUUU   26 Target Full Sequence	2.5	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   |||-|=|||||*|||||||||||| targets:396   UUA-UGCCUAAGUUGCCACACUUU   418 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=*||||||||||||||||| targets:706   UUGAUGGCUAACUUGCCACACUUU   729 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAUGAUGGAUUGAACGGUGUGAAA   1   ||=*|=*||||||||||||||||| targets:2671   UUGAUGGCUAACUUGCCACACUUU   2694 Target Full Sequence	2.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||||||*|*|||||||||||| targets:1642   UUCACUACCUCAGUUGCCACACUUU   1666 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||||||*|*|||||||||||| targets:1712   UUCACUACCUCAGUUGCCACACUUU   1736 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-|||||||*|*|||||||||||| targets:1712   UUCACUACCUCAGUUGCCACACUUU   1736 Target Full Sequence	2.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAUG-AUGGAUUGAACGGUGUGAAA   1   ||=|-|||||*|*|||||||||||| targets:793   UUGCCUACCUCAAUUGCCACACUUU   817 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AA-UGAUGGAUUGAACGGUGUGAAA   1   ||-==|||||*|*|||||||||||| targets:2572   UUCGUUACCUCAAUUGCCACACUUU   2596 Target Full Sequence	2.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget