Search result

BaseInfo

ncRNA ID ath-miRf10060-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UCCGGAGGGAUUCCUUCCUU - NA
Stem-loop(if miRNA)    AAUG     U   C          UGUUGUAA     G  U U  GACC     CAA    C
CCA    GAGGG GGA UCCUUUUGGA        UCAGC AG G GC    GUCUU   GCUG U
|||    ||||| ||| ||||||||||        ||||| || | ||    |||||   |||| U
GGU    UUCCU CCU AGGGAGGCCU        AGUCG UC C CG    UAGAA   CGGC A
   CCUA     U   U          --------     -  U -  --AA     --A    C
Stem-loop sequence CCAAAUGGAGGGUGGACUCCUUUUGGAUGUUGUAAUCAGCGAGUGUGCGACCGUCUUCAAGCUGCUUACCGGCAAAGAUAAGCCUCUGCUGAUCCGGAGGGAUUCCUUCCUUAUCCUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JX089332.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:97   AAGGAAGGAAUCCCUCCGGA   116

0.0 Arabidopsis thaliana clone Ub2 polyubiquitin mRNA, complete cds NA coding protein psRNATarget
DQ793132.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:296   AAGGAAGGAAUCCCUCCGGA   315

0.0 Arabidopsis thaliana ubiquitin (UBQ10) mRNA, partial cds NA coding protein psRNATarget
JX089333.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:325   AAGGAAGGAAUCCCUCCGGA   344

0.0 Arabidopsis thaliana clone Ub3 polyubiquitin mRNA, complete cds NA coding protein psRNATarget
DQ793133.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:68   AAGGAAGGAAUCCCUCCGGA   87

0.0 Arabidopsis thaliana ubiquitin (UBQ3) mRNA, partial cds NA coding protein psRNATarget
BT025868.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:325   AAGGAAGGAAUCCCUCCGGA   344

0.0 Arabidopsis thaliana At5g03240 mRNA, complete cds NA coding protein psRNATarget
NM_001340546.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:182   AAGGAAGGAAUCCCUCCGGA   201

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
NM_105209.4
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:97   AAGGAAGGAAUCCCUCCGGA   116

0.0 Arabidopsis thaliana ubiquitin 13 (UBQ13), partial mRNA ubiquitin 13(UBQ13) coding protein psRNATarget
JX089331.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:97   AAGGAAGGAAUCCCUCCGGA   116

0.0 Arabidopsis thaliana clone Ub4 polyubiquitin mRNA, complete cds NA coding protein psRNATarget
JX089331.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:553   AAGGAAGGAAUCCCUCCGGA   572

0.0 Arabidopsis thaliana clone Ub4 polyubiquitin mRNA, complete cds NA coding protein psRNATarget
NM_202787.4
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:638   AAGGAAGGAAUCCCUCCGGA   657

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
BX828308.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:793   AAGGAAGGAAUCCCUCCGGA   812

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK317101.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:393   AAGGAAGGAAUCCCUCCGGA   412

0.0 Arabidopsis thaliana AT5G03240 mRNA, complete cds, clone: RAFL21-69-O11 NA coding protein psRNATarget
BT002420.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:409   AAGGAAGGAAUCCCUCCGGA   428

0.0 Arabidopsis thaliana polyubiquitin (UBQ3) (At5g03240) mRNA, complete cds NA coding protein psRNATarget
AY057500.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:847   AAGGAAGGAAUCCCUCCGGA   866

0.0 Arabidopsis thaliana AT4g05320/C17L7_240 mRNA, complete cds NA coding protein psRNATarget
NM_001343676.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:258   AAGGAAGGAAUCCCUCCGGA   277

0.0 Arabidopsis thaliana ubiquitin 4 (UBQ4), mRNA ubiquitin 4(UBQ4) coding protein psRNATarget
AY052698.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:847   AAGGAAGGAAUCCCUCCGGA   866

0.0 Arabidopsis thaliana AT4g05320/C17L7_240 mRNA, complete cds NA coding protein psRNATarget
AK228265.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:420   AAGGAAGGAAUCCCUCCGGA   439

0.0 Arabidopsis thaliana mRNA for polyubiquitin 4 UBQ4, complete cds, clone: RAFL14-72-A15 NA coding protein psRNATarget
NM_116771.5
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:866   AAGGAAGGAAUCCCUCCGGA   885

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
NM_180698.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:567   AAGGAAGGAAUCCCUCCGGA   586

0.0 Arabidopsis thaliana polyubiquitin 3 (UBQ3), mRNA polyubiquitin 3(UBQ3) coding protein psRNATarget
NM_122069.4
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:439   AAGGAAGGAAUCCCUCCGGA   458

0.0 Arabidopsis thaliana ubiquitin 4 (UBQ4), mRNA ubiquitin 4(UBQ4) coding protein psRNATarget
NM_120402.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:724   AAGGAAGGAAUCCCUCCGGA   743

0.0 Arabidopsis thaliana polyubiquitin 3 (UBQ3), mRNA polyubiquitin 3(UBQ3) coding protein psRNATarget
NM_178969.6
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1069   AAGGAAGGAAUCCCUCCGGA   1088

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
BX827035.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1069   AAGGAAGGAAUCCCUCCGGA   1088

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB89ZE09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
L05361.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1051   AAGGAAGGAAUCCCUCCGGA   1070

0.0 Arabidopsis thaliana polyubiquitin (ubq10) mRNA, complete cds NA coding protein psRNATarget
NM_001036747.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:742   AAGGAAGGAAUCCCUCCGGA   761

0.0 Arabidopsis thaliana polyubiquitin 3 (UBQ3), mRNA polyubiquitin 3(UBQ3) coding protein psRNATarget
BT000701.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1075   AAGGAAGGAAUCCCUCCGGA   1094

0.0 Arabidopsis thaliana clone RAFL08-11-A12 (R11186) putative polyubiquitin (UBQ10) (At4g05320) mRNA, complete cds NA coding protein psRNATarget
NM_178970.5
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1059   AAGGAAGGAAUCCCUCCGGA   1078

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
AY056295.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1075   AAGGAAGGAAUCCCUCCGGA   1094

0.0 Arabidopsis thaliana At4g05320 mRNA sequence NA coding protein psRNATarget
NM_001084884.5
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1056   AAGGAAGGAAUCCCUCCGGA   1075

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
AY139999.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1075   AAGGAAGGAAUCCCUCCGGA   1094

0.0 Arabidopsis thaliana polyubiquitin UBQ10 (At4g05320) mRNA, complete cds NA coding protein psRNATarget
NM_178968.5
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||||||||
targets:1287   AAGGAAGGAAUCCCUCCGGA   1306

0.0 Arabidopsis thaliana polyubiquitin 10 (UBQ10), mRNA polyubiquitin 10(UBQ10) coding protein psRNATarget
AY059080.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*|||||||||||||||||
targets:97   AAAGAAGGAAUCCCUCCGGA   116

1.0 Arabidopsis thaliana putative ubiquitin extension protein UBQ1 (At3g52590) mRNA, complete cds NA coding protein psRNATarget
AY085820.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*|||||||||||||||||
targets:129   AAAGAAGGAAUCCCUCCGGA   148

1.0 Arabidopsis thaliana clone 18586 mRNA, complete sequence NA coding protein psRNATarget
AY035148.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*|||||||||||||||||
targets:125   AAAGAAGGAAUCCCUCCGGA   144

1.0 Arabidopsis thaliana putative ubiquitin extension protein UBQ1 (At3g52590) mRNA, complete cds NA coding protein psRNATarget
BX825992.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*|||||||||||||||||
targets:111   AAAGAAGGAAUCCCUCCGGA   130

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL77ZH03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_115119.4
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*|||||||||||||||||
targets:386   AAAGAAGGAAUCCCUCCGGA   405

1.0 Arabidopsis thaliana ubiquitin extension protein 1 (UBQ1), mRNA ubiquitin extension protein 1(UBQ1) coding protein psRNATarget
NM_123123.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  |||||||||=||||||||||
targets:331   AAGGAAGGAGUCCCUCCGGA   350

1.5 Arabidopsis thaliana ubiquitin 9 (UBQ9), partial mRNA ubiquitin 9(UBQ9) coding protein psRNATarget
BT024763.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:97   AAGGAAGGAAUCCCACCGGA   116

1.5 Arabidopsis thaliana At1g23410 mRNA, complete cds NA coding protein psRNATarget
AY143810.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:97   AAGGAAGGAAUCCCACCGGA   116

1.5 Arabidopsis thaliana At2g47110/F14M4.6 mRNA, complete cds NA coding protein psRNATarget
AY142033.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:97   AAGGAAGGAAUCCCACCGGA   116

1.5 Arabidopsis thaliana At2g47110/F14M4.6 mRNA, complete cds NA coding protein psRNATarget
AY139810.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:97   AAGGAAGGAAUCCCACCGGA   116

1.5 Arabidopsis thaliana At3g62250/T17J13_210 mRNA, complete cds NA coding protein psRNATarget
AY085389.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:113   AAGGAAGGAAUCCCACCGGA   132

1.5 Arabidopsis thaliana clone 1496 mRNA, complete sequence NA coding protein psRNATarget
AY088370.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:130   AAGGAAGGAAUCCCACCGGA   149

1.5 Arabidopsis thaliana clone 6247 mRNA, complete sequence NA coding protein psRNATarget
AK226902.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:110   AAGGAAGGAAUCCCACCGGA   129

1.5 Arabidopsis thaliana mRNA for ubiquitin extension protein, complete cds, clone: RAFL09-15-G07 NA coding protein psRNATarget
NM_001202839.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:163   AAGGAAGGAAUCCCACCGGA   182

1.5 Arabidopsis thaliana ubiquitin 6 (UBQ6), mRNA ubiquitin 6(UBQ6) coding protein psRNATarget
AY052219.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:110   AAGGAAGGAAUCCCACCGGA   129

1.5 Arabidopsis thaliana AT3g62250/T17J13_210 mRNA, complete cds NA coding protein psRNATarget
AF375416.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:130   AAGGAAGGAAUCCCACCGGA   149

1.5 Arabidopsis thaliana At2g47110/F14M4.6 mRNA, complete cds NA coding protein psRNATarget
AY084978.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:142   AAGGAAGGAAUCCCACCGGA   161

1.5 Arabidopsis thaliana clone 1233 mRNA, complete sequence NA coding protein psRNATarget
NM_130278.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:163   AAGGAAGGAAUCCCACCGGA   182

1.5 Arabidopsis thaliana ubiquitin 6 (UBQ6), mRNA ubiquitin 6(UBQ6) coding protein psRNATarget
BT001165.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:553   AAGGAAGGUAUCCCUCCGGA   572

1.5 Arabidopsis thaliana Unknown protein (At4g02890) mRNA, complete cds NA coding protein psRNATarget
NM_102190.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:184   AAGGAAGGAAUCCCACCGGA   203

1.5 Arabidopsis thaliana Ribosomal protein S27a / Ubiquitin family protein mRNA Ribosomal protein S27a / Ubiquitin family protein(AT1G23410) coding protein psRNATarget
AY042884.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:620   AAGGAAGGUAUCCCUCCGGA   639

1.5 Arabidopsis thaliana Unknown protein mRNA, complete cds NA coding protein psRNATarget
NM_116523.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:620   AAGGAAGGUAUCCCUCCGGA   639

1.5 Arabidopsis thaliana Ubiquitin family protein (UBQ14), mRNA Ubiquitin family protein(UBQ14) coding protein psRNATarget
AY086967.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:391   AAGGAAGGUAUCCCUCCGGA   410

1.5 Arabidopsis thaliana clone 3001 mRNA, complete sequence NA coding protein psRNATarget
AY086967.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:619   AAGGAAGGUAUCCCUCCGGA   638

1.5 Arabidopsis thaliana clone 3001 mRNA, complete sequence NA coding protein psRNATarget
NM_178960.2
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:623   AAGGAAGGUAUCCCUCCGGA   642

1.5 Arabidopsis thaliana Ubiquitin family protein (UBQ14), mRNA Ubiquitin family protein(UBQ14) coding protein psRNATarget
NM_116090.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||||||||*|||||
targets:217   AAGGAAGGAAUCCCACCGGA   236

1.5 Arabidopsis thaliana ubiquitin 5 (UBQ5), mRNA ubiquitin 5(UBQ5) coding protein psRNATarget
AK316842.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:849   AAGGAAGGUAUCCCUCCGGA   868

1.5 Arabidopsis thaliana AT4G02890 mRNA, complete cds, clone: RAFL09-96-D18 NA coding protein psRNATarget
AY087759.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:849   AAGGAAGGUAUCCCUCCGGA   868

1.5 Arabidopsis thaliana clone 38261 mRNA, complete sequence NA coding protein psRNATarget
NM_001125450.2
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:986   AAGGAAGGUAUCCCUCCGGA   1005

1.5 Arabidopsis thaliana Ubiquitin family protein (UBQ14), mRNA Ubiquitin family protein(UBQ14) coding protein psRNATarget
NM_178961.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||||||||*|||||||||||
targets:1145   AAGGAAGGUAUCCCUCCGGA   1164

1.5 Arabidopsis thaliana Ubiquitin family protein (UBQ14), mRNA Ubiquitin family protein(UBQ14) coding protein psRNATarget
AY056360.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*||||||||=||||||||
targets:97   AAAGAAGGAAUUCCUCCGGA   116

2.5 Arabidopsis thaliana putative ubiquitin extension protein UBQ2 (At2g36170) mRNA, complete cds NA coding protein psRNATarget
AK317456.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*||||||||=||||||||
targets:133   AAAGAAGGAAUUCCUCCGGA   152

2.5 Arabidopsis thaliana AT2G36170 mRNA, complete cds, clone: RAFL25-03-M17 NA coding protein psRNATarget
AF360311.1
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*||||||||=||||||||
targets:133   AAAGAAGGAAUUCCUCCGGA   152

2.5 Arabidopsis thaliana putative ubiquitin extension protein UBQ2 (At2g36170) mRNA, complete cds NA coding protein psRNATarget
NM_129175.3
ncRNA:20   UUCCUUCCUUAGGGAGGCCU   1
  ||*||||||||=||||||||
targets:189   AAAGAAGGAAUUCCUCCGGA   208

2.5 Arabidopsis thaliana 60S ribosomal protein L40-1 mRNA 60S ribosomal protein L40-1(AT2G36170) coding protein psRNATarget
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