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BaseInfo

ncRNA ID	novel_zma_miR5229
Species	Zea mays
Class	miRNA
Genome position	Chr4:50772831-50772914 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AUGGAUUGGUGUGUAUUGGGAUGG - 24
Stem-loop(if miRNA)	--A        -  U        A   AUUG    AA  UUUA    UGGAUUGG UG GUAUUGGG UGG    AGAU  AU    A    |||||||| || |||||||| |||    ||||  ||    C    ACCUAACC AC CAUAACUC GCC    UUUA  UA    U UAC        C  -        A   -AAA    GG  UCGU
Stem-loop sequence	AUGGAUUGGUGUGUAUUGGGAUGGAUUGAGAUAAAUUUUAACUUGCUAUGGAUUUAAACCGACUCAAUACCACCCAAUCCACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549676.1	ncRNA:24   GGUAGGGUUAUGUGUGGUUAGGUA   1   ||||||||||||||||||||*||* targets:2773   CCAUCCCAAUACACACCAAUACAC   2796 Target Full Sequence	2.5	PREDICTED: Zea mays MADS transcription factor (MADS36), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674507.2	ncRNA:24   GGUAGGGUUAUGUGUGGUUAGGUA   1   ||||||||||||||||||||*||* targets:2688   CCAUCCCAAUACACACCAAUACAC   2711 Target Full Sequence	2.5	PREDICTED: Zea mays MADS transcription factor (MADS36), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657627.2	ncRNA:24   GGUAGGGUUAUGUGUGGUUAGGUA   1   ||||||||||||||||||||*||* targets:750   CCAUCCCAAUACACACCAAUACAC   773 Target Full Sequence	2.5	PREDICTED: Zea mays cell wall / vacuolar inhibitor of fructosidase 2 (LOC103635072), mRNA	NA	coding protein	psRNATarget
EZ110342.1	ncRNA:24   GGUAGGGUUAUGUGUGGUUAGGUA   1   =||*=||||||||||||||||||* targets:7   UCACUCCAAUACACACCAAUCCAC   30 Target Full Sequence	1.0	TSA: Zea mays contig46002, mRNA sequence	NA	coding protein	psRNATarget
EZ077876.1	ncRNA:24   GGUAGGGUUAUGUGUGGUUAGGUA   1   *|||=|||||||||*||||||||* targets:68   ACAUUCCAAUACACUCCAAUCCAC   91 Target Full Sequence	2.5	TSA: Zea mays contig13515, mRNA sequence	NA	coding protein	psRNATarget
EZ094421.1	ncRNA:22   UAGGGUUA-UGUGUGGUUAGGUA   1   ||=|||||-|||||||||||||* targets:1   AUUCCAAUUACACACCAAUCCAC   23 Target Full Sequence	3.0	TSA: Zea mays contig30073, mRNA sequence	NA	coding protein	psRNATarget