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BaseInfo

ncRNA ID novel_zma_miR5227
Species Zea mays
Class miRNA
Genome position Chr4:5599013-5599094 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 1 - AAAUAAAGAGAAACGGAGGGAGUA - 24
Stem-loop(if miRNA) --           C   AA   A         U    A  A
  CUCCCUCCGUU CUU  UAU UGUCGUCCG UAGU CA A
  ||||||||||| |||  ||| ||||||||| |||| ||
  GAGGGAGGCAA GAG  AUA ACAGCAGGU AUCA GU U
AU           A   AA   A         U    A  U
Stem-loop sequence CUCCCUCCGUUCCUUAAUAUAUGUCGUCCGUUAGUACAAAUUUGAACUAUUGGACGACAAAUAAAGAGAAACGGAGGGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT017382.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||||||||||
targets:695   UACUCCCUCCGUUUCUCUUUAUUU   718

0.0 Zea mays clone EL01N0326E08.c mRNA sequence NA coding protein psRNATarget
LQ241745.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
JB170076.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
HI409615.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
HI408945.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
JB169406.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
HI408570.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
JB169171.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
HI408618.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
LQ241829.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7824 from Patent EP2985353 NA coding protein psRNATarget
JB169789.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
LQ240840.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
LQ242091.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
JB170422.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
JB169031.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
HI409328.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
LQ241746.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7741 from Patent EP2985353 NA coding protein psRNATarget
HI408710.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
HI409616.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7741 from Patent EP2074227 NA coding protein psRNATarget
LQ242326.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
LQ241075.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
HI409961.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
JB170160.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7824 from Patent EP2559767 NA coding protein psRNATarget
LQ240748.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
HI410196.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
HI409699.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7824 from Patent EP2074227 NA coding protein psRNATarget
JB170657.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
JB169079.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
LQ241458.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
JB170077.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 7741 from Patent EP2559767 NA coding protein psRNATarget
LQ240700.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:4   UACUCCCUCCGUUUCUUUUUAUUU   27

1.5 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
HI403294.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
JB163755.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
HI403279.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
JB163817.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1481 from Patent EP2559767 NA coding protein psRNATarget
LQ235486.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1481 from Patent EP2985353 NA coding protein psRNATarget
LQ235409.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
JB163862.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
HI403356.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1481 from Patent EP2074227 NA coding protein psRNATarget
HI403369.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
HI403401.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163830.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
JB163740.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:11   UACUCCCUCCGUUUCUUUUUAUUU   34

1.5 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
EU964901.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:497   UACUCCCUCCGUUUCUUUUUAUUU   520

1.5 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
EU974849.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:569   UACUCCCUCCGUUUCUUUUUAUUU   592

1.5 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:569   UACUCCCUCCGUUUCUUUUUAUUU   592

1.5 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:230   UACUCCCUCCGUUUCUUUUUAUUU   253

1.5 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1166   UACUCCCUCCGUUUCUUUUUAUUU   1189

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1288   UACUCCCUCCGUUUCUUUUUAUUU   1311

1.5 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1288   UACUCCCUCCGUUUCUUUUUAUUU   1311

1.5 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:141   UACUCCCUCCGUUUCUUUUUAUUU   164

1.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1272   UACUCCCUCCGUUUCUUUUUAUUU   1295

1.5 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1527   UACUCCCUCCGUUUCUUUUUAUUU   1550

1.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1543   UACUCCCUCCGUUUCUUUUUAUUU   1566

1.5 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:2435   UACUCCCUCCGUUUCUUUUUAUUU   2458

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:1463   UACUCCCUCCGUUUCUUUUUAUUU   1486

1.5 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:2796   UACUCCCUCCGUUUCUUUUUAUUU   2819

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:2813   UACUCCCUCCGUUUCUUUUUAUUU   2836

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:2919   UACUCCCUCCGUUUCUUUUUAUUU   2942

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546613.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=|||||||
targets:3698   UACUCCCUCCGUUUCUUUUUAUUU   3721

1.5 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
HI409094.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1   UACUCCCUCUGUUUCUUUUUAUUU   24

2.5 Sequence 7219 from Patent EP2074227 NA coding protein psRNATarget
JB169555.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1   UACUCCCUCUGUUUCUUUUUAUUU   24

2.5 Sequence 7219 from Patent EP2559767 NA coding protein psRNATarget
LQ241224.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1   UACUCCCUCUGUUUCUUUUUAUUU   24

2.5 Sequence 7219 from Patent EP2985353 NA coding protein psRNATarget
HI408854.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:1   UACUCUCUCCGUUUCUUUUUAUUU   24

2.5 Sequence 6979 from Patent EP2074227 NA coding protein psRNATarget
LQ240984.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:1   UACUCUCUCCGUUUCUUUUUAUUU   24

2.5 Sequence 6979 from Patent EP2985353 NA coding protein psRNATarget
JB169315.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:1   UACUCUCUCCGUUUCUUUUUAUUU   24

2.5 Sequence 6979 from Patent EP2559767 NA coding protein psRNATarget
LQ242145.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:4   UACUCCCUCUGUUUCUUUUUAUUU   27

2.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
JB170476.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:4   UACUCCCUCUGUUUCUUUUUAUUU   27

2.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
HI410015.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:4   UACUCCCUCUGUUUCUUUUUAUUU   27

2.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
LQ241729.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:4   UACUCUCUCCGUUUCUUUUUAUUU   27

2.5 Sequence 7724 from Patent EP2985353 NA coding protein psRNATarget
JB170060.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:4   UACUCUCUCCGUUUCUUUUUAUUU   27

2.5 Sequence 7724 from Patent EP2559767 NA coding protein psRNATarget
HI409599.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||=||||||||||=|||||||
targets:4   UACUCUCUCCGUUUCUUUUUAUUU   27

2.5 Sequence 7724 from Patent EP2074227 NA coding protein psRNATarget
BT068381.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1109   UACUCCCUCUGUUUCUUUUUAUUU   1132

2.5 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1062   UACUCCCUCUGUUUCUUUUUAUUU   1085

2.5 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
EU973028.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1168   UACUCCCUCUGUUUCUUUUUAUUU   1191

2.5 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT088158.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1202   UACUCCCUCUGUUUCUUUUUAUUU   1225

2.5 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
XM_008656167.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1221   UACUCCCUCUGUUUCUUUUUAUUU   1244

2.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||=|||||||||||=|||||||
targets:1355   UACUUCCUCCGUUUCUUUUUAUUU   1378

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1402   UACUCCCUCUGUUUCUUUUUAUUU   1425

2.5 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1402   UACUCCCUCUGUUUCUUUUUAUUU   1425

2.5 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656166.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:1266   UACUCCCUCUGUUUCUUUUUAUUU   1289

2.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||=||||||=|||||||
targets:2000   UACUCCCUCUGUUUCUUUUUAUUU   2023

2.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||=|||||||||||=|||||||
targets:2496   UACUUCCUCCGUUUCUUUUUAUUU   2519

1.5 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
EU973473.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:649   UACUCCCUCCGUUUCUUUUUAUUA   672

2.5 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
EZ061772.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:184   UACUCCCUCCGUUUCUUUUUAUUA   207

2.5 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
BT024153.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:190   UACUCCCUCCGUUUCUUUUUAUUA   213

2.5 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:1600   UACUCCCUCCGUUUCUUUUUAUUA   1623

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:164   UACUCCCUCCGUUUCUUUUUAUUA   187

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:1977   UACUCCCUCCGUUUCUUUUUAUUA   2000

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  ||||||||||||||||=||||||*
targets:2044   UACUCCCUCCGUUUCUUUUUAUUA   2067

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669416.2
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||||*||||||||||=|||||||
targets:489   UACUCACUCCGUUUCUUUUUAUUU   512

2.5 PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA NA coding protein psRNATarget
HI405830.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3955 from Patent EP2074227 NA coding protein psRNATarget
LQ237960.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3955 from Patent EP2985353 NA coding protein psRNATarget
JB166291.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3955 from Patent EP2559767 NA coding protein psRNATarget
JB166285.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3949 from Patent EP2559767 NA coding protein psRNATarget
LQ237954.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3949 from Patent EP2985353 NA coding protein psRNATarget
HI405824.1
ncRNA:23   UGAGGGAGGCAAAGAGAAAUAAA   1
  |||||||||||||||=||||||*
targets:1   ACUCCCUCCGUUUCUUUUUAUUA   23

2.5 Sequence 3949 from Patent EP2074227 NA coding protein psRNATarget
EU943455.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:190   UAC-CCCUCCGUUUCUUUUUAUUU   212

1.5 Zea mays clone 1624294 mRNA sequence NA coding protein psRNATarget
EU975941.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:550   UAC-CCCUCCGUUUCUUUUUAUUU   572

1.5 Zea mays clone 506054 oleosin 16 kDa mRNA, complete cds NA coding protein psRNATarget
EU968632.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:559   UAC-CCCUCCGUUUCUUUUUAUUU   581

1.5 Zea mays clone 322947 oleosin 16 kDa mRNA, complete cds NA coding protein psRNATarget
NM_001349993.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:556   UAC-CCCUCCGUUUCUUUUUAUUU   578

1.5 Zea mays oleosin 16 kDa (oleosin), mRNA NA coding protein psRNATarget
EU952246.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:556   UAC-CCCUCCGUUUCUUUUUAUUU   578

1.5 Zea mays clone 1272655 oleosin 16 kDa mRNA, complete cds NA coding protein psRNATarget
EU976836.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:555   UAC-CCCUCCGUUUCUUUUUAUUU   577

1.5 Zea mays clone 991472 oleosin 16 kDa mRNA, complete cds NA coding protein psRNATarget
EU952863.1
ncRNA:24   AUGAGGGAGGCAAAGAGAAAUAAA   1
  |||-||||||||||||=|||||||
targets:557   UAC-CCCUCCGUUUCUUUUUAUUU   579

1.5 Zea mays clone 1291487 oleosin 16 kDa mRNA, complete cds NA coding protein psRNATarget
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